miRNA display CGI


Results 41 - 60 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5539 5' -58.2 NC_001806.1 + 135752 0.67 0.741901
Target:  5'- aACCAcGGCCgugcggaagGCCUGGCGaagcugcGGCGCCCg -3'
miRNA:   3'- -UGGUcUCGGa--------CGGGUUGUa------CCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 132759 0.67 0.741901
Target:  5'- aGCCGGAuGCCuccUGCCCGcggugcgggagGCGguggcgcggUGGCAUCCc -3'
miRNA:   3'- -UGGUCU-CGG---ACGGGU-----------UGU---------ACCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 42914 0.67 0.741901
Target:  5'- cCCAuuuAGCCcGCCCGACGcuUGGUagagcGCCCg -3'
miRNA:   3'- uGGUc--UCGGaCGGGUUGU--ACCG-----UGGG- -5'
5539 5' -58.2 NC_001806.1 + 121408 0.67 0.741901
Target:  5'- aGCCGGGcgcgugcugcGCCUuggGCCCGgggGCcugGUGGCACCUc -3'
miRNA:   3'- -UGGUCU----------CGGA---CGGGU---UG---UACCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 4329 0.67 0.732176
Target:  5'- gGCCAccGCCgcgcggGCCCGGC--GGCGCUCg -3'
miRNA:   3'- -UGGUcuCGGa-----CGGGUUGuaCCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 96375 0.67 0.732176
Target:  5'- cGCCAGGGC--GCCCccgcGCGggGGCGCCg -3'
miRNA:   3'- -UGGUCUCGgaCGGGu---UGUa-CCGUGGg -5'
5539 5' -58.2 NC_001806.1 + 150882 0.67 0.732176
Target:  5'- gGCCAGGGCCcggGCaCgGGCcucgGGC-CCCa -3'
miRNA:   3'- -UGGUCUCGGa--CG-GgUUGua--CCGuGGG- -5'
5539 5' -58.2 NC_001806.1 + 35596 0.67 0.722365
Target:  5'- cGCCGGAGUUuugGCCCuGGCGgguuauUGGCAaCCCc -3'
miRNA:   3'- -UGGUCUCGGa--CGGG-UUGU------ACCGU-GGG- -5'
5539 5' -58.2 NC_001806.1 + 112374 0.68 0.712478
Target:  5'- cACCAcGGCCacgcaGCCCucCGUGGCcguGCCCc -3'
miRNA:   3'- -UGGUcUCGGa----CGGGuuGUACCG---UGGG- -5'
5539 5' -58.2 NC_001806.1 + 119922 0.68 0.712478
Target:  5'- gACCGaGGCCUGCgCCGcagaacGCGUcGuGCGCCCc -3'
miRNA:   3'- -UGGUcUCGGACG-GGU------UGUA-C-CGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 127059 0.68 0.712478
Target:  5'- uCCGGGGCCcgGCCCuGCu--GCugCCg -3'
miRNA:   3'- uGGUCUCGGa-CGGGuUGuacCGugGG- -5'
5539 5' -58.2 NC_001806.1 + 67834 0.68 0.712478
Target:  5'- gGCCAuuuGGGCC-GCCCcGCAgaaaguccGCACCCa -3'
miRNA:   3'- -UGGU---CUCGGaCGGGuUGUac------CGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 52083 0.68 0.703521
Target:  5'- gACCGGGGUCccagcggcacgaccgGCuCCAugcaguGCAUGGCGCUCa -3'
miRNA:   3'- -UGGUCUCGGa--------------CG-GGU------UGUACCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 130635 0.68 0.702523
Target:  5'- uGCUGGAgGCCUGUCUccgcguuccCAUGGCcACCCg -3'
miRNA:   3'- -UGGUCU-CGGACGGGuu-------GUACCG-UGGG- -5'
5539 5' -58.2 NC_001806.1 + 79823 0.68 0.702523
Target:  5'- cCCAGAGCCagcGcCCCAGCuuUGGUgucugguguGCCCc -3'
miRNA:   3'- uGGUCUCGGa--C-GGGUUGu-ACCG---------UGGG- -5'
5539 5' -58.2 NC_001806.1 + 1737 0.68 0.702523
Target:  5'- cGCCGGcAGCacgGCCCGGC--GGUACUCg -3'
miRNA:   3'- -UGGUC-UCGga-CGGGUUGuaCCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 27090 0.68 0.702523
Target:  5'- gGCCcgcGGAGCCgGCCCGGCGaacucGGUcuaacguuacACCCg -3'
miRNA:   3'- -UGG---UCUCGGaCGGGUUGUa----CCG----------UGGG- -5'
5539 5' -58.2 NC_001806.1 + 72514 0.68 0.702523
Target:  5'- gGCCugggGGAGcCCUGCgUCGGCGUGG-GCCCc -3'
miRNA:   3'- -UGG----UCUC-GGACG-GGUUGUACCgUGGG- -5'
5539 5' -58.2 NC_001806.1 + 120812 0.68 0.701524
Target:  5'- cGCCucuGGGGUUUGCCCuccccccgcccccGGCAUGGCGCa- -3'
miRNA:   3'- -UGG---UCUCGGACGGG-------------UUGUACCGUGgg -5'
5539 5' -58.2 NC_001806.1 + 106363 0.68 0.692509
Target:  5'- cGCCGGuugggGCCCGGC--GGCACCCg -3'
miRNA:   3'- -UGGUCucggaCGGGUUGuaCCGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.