Results 41 - 60 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5539 | 5' | -58.2 | NC_001806.1 | + | 57045 | 0.69 | 0.601158 |
Target: 5'- cCCGGGGCCgggGCCCccggcugcguGCcgGGCucCCCg -3' miRNA: 3'- uGGUCUCGGa--CGGGu---------UGuaCCGu-GGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 125843 | 0.69 | 0.610302 |
Target: 5'- cGCCGcGGGCC--CCCGGCcgccgcggacgccGUGGCGCCCc -3' miRNA: 3'- -UGGU-CUCGGacGGGUUG-------------UACCGUGGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 23295 | 0.69 | 0.611319 |
Target: 5'- cGCaAGAGUCccgGCCCGGCccGGCcGCCCg -3' miRNA: 3'- -UGgUCUCGGa--CGGGUUGuaCCG-UGGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 139756 | 0.69 | 0.611319 |
Target: 5'- gACCAGcGCaCUGCCCGACGccGCGCa- -3' miRNA: 3'- -UGGUCuCG-GACGGGUUGUacCGUGgg -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 119271 | 0.69 | 0.611319 |
Target: 5'- aGCCcuuGGCCcgGCCCcACGcgggGGCGCCCg -3' miRNA: 3'- -UGGuc-UCGGa-CGGGuUGUa---CCGUGGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 79741 | 0.69 | 0.611319 |
Target: 5'- cCCAGGguuggcggccGCCUGCCCuccccGACAcGGuCGCCCc -3' miRNA: 3'- uGGUCU----------CGGACGGG-----UUGUaCC-GUGGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 23564 | 0.69 | 0.611319 |
Target: 5'- cCCGGGGCCcaGCCacACGgcGGCGCCCg -3' miRNA: 3'- uGGUCUCGGa-CGGguUGUa-CCGUGGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 26682 | 0.69 | 0.621496 |
Target: 5'- gGCCccGGCCcccaccGCCCGGCGUGG-GCCCg -3' miRNA: 3'- -UGGucUCGGa-----CGGGUUGUACCgUGGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 81361 | 0.69 | 0.621496 |
Target: 5'- gGCCGGGGCgUcGCCCGcgaACAUaGGCugCg -3' miRNA: 3'- -UGGUCUCGgA-CGGGU---UGUA-CCGugGg -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 151002 | 0.69 | 0.630661 |
Target: 5'- cGCCAGgcgggcGGCCgagGCCCAgaccaccAgGUGGCgcACCCg -3' miRNA: 3'- -UGGUC------UCGGa--CGGGU-------UgUACCG--UGGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 3460 | 0.69 | 0.63168 |
Target: 5'- gGCCAcgcGGCCgGCCUgGGCGcGGCGCCCg -3' miRNA: 3'- -UGGUc--UCGGaCGGG-UUGUaCCGUGGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 75567 | 0.69 | 0.63168 |
Target: 5'- gGCCGGGGaCCacuccCCCAGCggGcGCGCCCu -3' miRNA: 3'- -UGGUCUC-GGac---GGGUUGuaC-CGUGGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 32964 | 0.69 | 0.63168 |
Target: 5'- gGCCGGGGCCccuuggGUCCGcCggGGC-CCCg -3' miRNA: 3'- -UGGUCUCGGa-----CGGGUuGuaCCGuGGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 31765 | 0.69 | 0.63168 |
Target: 5'- -aCAGAGCCgcgGCCCg----GGCugCCu -3' miRNA: 3'- ugGUCUCGGa--CGGGuuguaCCGugGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 22159 | 0.69 | 0.63168 |
Target: 5'- cGCCGGuucgaGGCCUcgggcGcCCCGGCGgccgugugGGCGCCCg -3' miRNA: 3'- -UGGUC-----UCGGA-----C-GGGUUGUa-------CCGUGGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 109047 | 0.69 | 0.63168 |
Target: 5'- --gGGGGCUcagGCCCAACGcGGC-CCCg -3' miRNA: 3'- uggUCUCGGa--CGGGUUGUaCCGuGGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 78242 | 0.69 | 0.638809 |
Target: 5'- cCCGGGGCCucaUGUUCGGCAcgcggcuggcagacUGGCGCCg -3' miRNA: 3'- uGGUCUCGG---ACGGGUUGU--------------ACCGUGGg -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 149748 | 0.69 | 0.641865 |
Target: 5'- --uGGcGCCc-CCCAAUAUGGCGCCCc -3' miRNA: 3'- uggUCuCGGacGGGUUGUACCGUGGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 96513 | 0.69 | 0.641865 |
Target: 5'- aACgGGGGcCCUGCcacuCCGGCGccgcccgccccUGGCGCCCc -3' miRNA: 3'- -UGgUCUC-GGACG----GGUUGU-----------ACCGUGGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 31245 | 0.69 | 0.652041 |
Target: 5'- gACCAGGGCa--CCCuagugGGCGCCCu -3' miRNA: 3'- -UGGUCUCGgacGGGuuguaCCGUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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