miRNA display CGI


Results 21 - 40 of 135 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5539 5' -58.2 NC_001806.1 + 70918 0.71 0.482808
Target:  5'- --aAGGGCCUGCagacggagcgcgCCGugguCGUGGCGCCCu -3'
miRNA:   3'- uggUCUCGGACG------------GGUu---GUACCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 114511 0.71 0.492293
Target:  5'- cGCCGGGGCCga-CC-ACGUGGCgaacgcGCCCa -3'
miRNA:   3'- -UGGUCUCGGacgGGuUGUACCG------UGGG- -5'
5539 5' -58.2 NC_001806.1 + 116340 0.71 0.492293
Target:  5'- aAUCGucGCCUGCCCccugGACGUGGgccuCACCCa -3'
miRNA:   3'- -UGGUcuCGGACGGG----UUGUACC----GUGGG- -5'
5539 5' -58.2 NC_001806.1 + 149617 0.71 0.501864
Target:  5'- -aCGGGGUUccacGCCCccuAACAUGGCGCCCc -3'
miRNA:   3'- ugGUCUCGGa---CGGG---UUGUACCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 115084 0.71 0.505715
Target:  5'- cGCCuGGGGCCgGCCCAGCccGuccccguguucggguGCGCCCa -3'
miRNA:   3'- -UGG-UCUCGGaCGGGUUGuaC---------------CGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 4285 0.71 0.521242
Target:  5'- cGCCGGGG-CUGCCCGGcCGUGaaGCgGCCCg -3'
miRNA:   3'- -UGGUCUCgGACGGGUU-GUAC--CG-UGGG- -5'
5539 5' -58.2 NC_001806.1 + 2249 0.71 0.521242
Target:  5'- gGCCAGGGCCg--CCAGCA-GGCaggacaGCCCg -3'
miRNA:   3'- -UGGUCUCGGacgGGUUGUaCCG------UGGG- -5'
5539 5' -58.2 NC_001806.1 + 22890 0.7 0.540905
Target:  5'- gGCCGGGGCCcgGCCCGccagccccccGCGgccggaGGgACCCg -3'
miRNA:   3'- -UGGUCUCGGa-CGGGU----------UGUa-----CCgUGGG- -5'
5539 5' -58.2 NC_001806.1 + 76334 0.7 0.540905
Target:  5'- gGCCGccGAGCUUGUCCgGGCAggGGuCACCCu -3'
miRNA:   3'- -UGGU--CUCGGACGGG-UUGUa-CC-GUGGG- -5'
5539 5' -58.2 NC_001806.1 + 144948 0.7 0.550831
Target:  5'- cGCCAacGGCCgGCCCc-CGUGGCgGCCCg -3'
miRNA:   3'- -UGGUc-UCGGaCGGGuuGUACCG-UGGG- -5'
5539 5' -58.2 NC_001806.1 + 133272 0.7 0.550831
Target:  5'- gGCCAacGCC-GUCCGGCugcGGCACCCa -3'
miRNA:   3'- -UGGUcuCGGaCGGGUUGua-CCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 52557 0.7 0.550831
Target:  5'- -gCGGGGCCUcCCCcggacGACAUGGCcagcgGCCCg -3'
miRNA:   3'- ugGUCUCGGAcGGG-----UUGUACCG-----UGGG- -5'
5539 5' -58.2 NC_001806.1 + 126892 0.7 0.550831
Target:  5'- cUCGGGGCCgcagGaCCCAGCAaGGCGUCCa -3'
miRNA:   3'- uGGUCUCGGa---C-GGGUUGUaCCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 111432 0.7 0.560811
Target:  5'- cCCGGuGCCUuuccccCCCGACc-GGCACCCg -3'
miRNA:   3'- uGGUCuCGGAc-----GGGUUGuaCCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 23105 0.7 0.560811
Target:  5'- cGCCGGGGCCcuggGCCCcGCGcugccgcGGgACCCg -3'
miRNA:   3'- -UGGUCUCGGa---CGGGuUGUa------CCgUGGG- -5'
5539 5' -58.2 NC_001806.1 + 80301 0.7 0.560811
Target:  5'- aGCCGGuGGCCacGCCCAccACAucUGcGCGCCCc -3'
miRNA:   3'- -UGGUC-UCGGa-CGGGU--UGU--AC-CGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 46109 0.7 0.57084
Target:  5'- cCCGGGGCCUGCgCg----GGCGCCUc -3'
miRNA:   3'- uGGUCUCGGACGgGuuguaCCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 47259 0.7 0.580912
Target:  5'- cGCCuGAGCCagGCCCAGCucAUGcccucccCACCCa -3'
miRNA:   3'- -UGGuCUCGGa-CGGGUUG--UACc------GUGGG- -5'
5539 5' -58.2 NC_001806.1 + 146853 0.7 0.59102
Target:  5'- aGCCGGGGaCCgcgGCCCGcaGCcgGGuCGCCa -3'
miRNA:   3'- -UGGUCUC-GGa--CGGGU--UGuaCC-GUGGg -5'
5539 5' -58.2 NC_001806.1 + 57045 0.69 0.601158
Target:  5'- cCCGGGGCCgggGCCCccggcugcguGCcgGGCucCCCg -3'
miRNA:   3'- uGGUCUCGGa--CGGGu---------UGuaCCGu-GGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.