miRNA display CGI


Results 21 - 40 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5539 5' -58.2 NC_001806.1 + 132509 0.66 0.786186
Target:  5'- cCCGGGGCCcuggcccccgucuuUGCCUuuC-UGGgGCCCg -3'
miRNA:   3'- uGGUCUCGG--------------ACGGGuuGuACCgUGGG- -5'
5539 5' -58.2 NC_001806.1 + 131376 0.66 0.81466
Target:  5'- cACCGaGGCCUgGCCCAugauGCAgggGGCggugaacuuuagcACCCu -3'
miRNA:   3'- -UGGUcUCGGA-CGGGU----UGUa--CCG-------------UGGG- -5'
5539 5' -58.2 NC_001806.1 + 45377 0.66 0.797939
Target:  5'- gGCCAaauGUCUGCCCcgggGGCccUGGUGCCCu -3'
miRNA:   3'- -UGGUcu-CGGACGGG----UUGu-ACCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 30942 0.67 0.774201
Target:  5'- cGCUA---CCUGCCCAucucgggggucucuaGCGUGGuCGCCCu -3'
miRNA:   3'- -UGGUcucGGACGGGU---------------UGUACC-GUGGG- -5'
5539 5' -58.2 NC_001806.1 + 23831 0.67 0.770469
Target:  5'- cGCCucGGGCCcgcUGCgCC-GCAUGGCGgCCu -3'
miRNA:   3'- -UGGu-CUCGG---ACG-GGuUGUACCGUgGG- -5'
5539 5' -58.2 NC_001806.1 + 35596 0.67 0.722365
Target:  5'- cGCCGGAGUUuugGCCCuGGCGgguuauUGGCAaCCCc -3'
miRNA:   3'- -UGGUCUCGGa--CGGG-UUGU------ACCGU-GGG- -5'
5539 5' -58.2 NC_001806.1 + 30261 0.67 0.741901
Target:  5'- uCCGGGGCCcgGCCCccGCGccccGGCcCCCg -3'
miRNA:   3'- uGGUCUCGGa-CGGGu-UGUa---CCGuGGG- -5'
5539 5' -58.2 NC_001806.1 + 93004 0.67 0.770469
Target:  5'- cGCCAGcugcaaccuGCUgcgGCCCGuCAUGGCggcgcGCCCc -3'
miRNA:   3'- -UGGUCu--------CGGa--CGGGUuGUACCG-----UGGG- -5'
5539 5' -58.2 NC_001806.1 + 4329 0.67 0.732176
Target:  5'- gGCCAccGCCgcgcggGCCCGGC--GGCGCUCg -3'
miRNA:   3'- -UGGUcuCGGa-----CGGGUUGuaCCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 124896 0.67 0.752488
Target:  5'- cGCCGGAcuucGCCcugGCCCugcucgccuaucgcuGCGUGcuGCACCCa -3'
miRNA:   3'- -UGGUCU----CGGa--CGGGu--------------UGUAC--CGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 132759 0.67 0.741901
Target:  5'- aGCCGGAuGCCuccUGCCCGcggugcgggagGCGguggcgcggUGGCAUCCc -3'
miRNA:   3'- -UGGUCU-CGG---ACGGGU-----------UGU---------ACCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 121408 0.67 0.741901
Target:  5'- aGCCGGGcgcgugcugcGCCUuggGCCCGgggGCcugGUGGCACCUc -3'
miRNA:   3'- -UGGUCU----------CGGA---CGGGU---UG---UACCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 20184 0.67 0.751531
Target:  5'- cCCGGGGCCggcgcggaGUCgGGCAcGGCGCCa -3'
miRNA:   3'- uGGUCUCGGa-------CGGgUUGUaCCGUGGg -5'
5539 5' -58.2 NC_001806.1 + 134927 0.67 0.751531
Target:  5'- cCCGGcgauGGCCUGCUUgaggAugGUGGCGgCCg -3'
miRNA:   3'- uGGUC----UCGGACGGG----UugUACCGUgGG- -5'
5539 5' -58.2 NC_001806.1 + 92506 0.67 0.760109
Target:  5'- uCCAGAgcGCCUaccagaaGCCCGACAagcgcgUGGaCAUCCu -3'
miRNA:   3'- uGGUCU--CGGA-------CGGGUUGU------ACC-GUGGG- -5'
5539 5' -58.2 NC_001806.1 + 96375 0.67 0.732176
Target:  5'- cGCCAGGGC--GCCCccgcGCGggGGCGCCg -3'
miRNA:   3'- -UGGUCUCGgaCGGGu---UGUa-CCGUGGg -5'
5539 5' -58.2 NC_001806.1 + 42914 0.67 0.741901
Target:  5'- cCCAuuuAGCCcGCCCGACGcuUGGUagagcGCCCg -3'
miRNA:   3'- uGGUc--UCGGaCGGGUUGU--ACCG-----UGGG- -5'
5539 5' -58.2 NC_001806.1 + 67184 0.67 0.751531
Target:  5'- cCCAG-GCCUcGCCCAGCcgcucGGuCugCCg -3'
miRNA:   3'- uGGUCuCGGA-CGGGUUGua---CC-GugGG- -5'
5539 5' -58.2 NC_001806.1 + 139429 0.67 0.770469
Target:  5'- cCCAGGGCCUuaGCCUgGACAaGGuCGCCa -3'
miRNA:   3'- uGGUCUCGGA--CGGG-UUGUaCC-GUGGg -5'
5539 5' -58.2 NC_001806.1 + 150882 0.67 0.732176
Target:  5'- gGCCAGGGCCcggGCaCgGGCcucgGGC-CCCa -3'
miRNA:   3'- -UGGUCUCGGa--CG-GgUUGua--CCGuGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.