miRNA display CGI


Results 21 - 40 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5539 5' -58.2 NC_001806.1 + 23105 0.7 0.560811
Target:  5'- cGCCGGGGCCcuggGCCCcGCGcugccgcGGgACCCg -3'
miRNA:   3'- -UGGUCUCGGa---CGGGuUGUa------CCgUGGG- -5'
5539 5' -58.2 NC_001806.1 + 23190 0.74 0.376023
Target:  5'- aACCAGAGCCUGCgCCcccugcuGGCGgcGGCGgCCa -3'
miRNA:   3'- -UGGUCUCGGACG-GG-------UUGUa-CCGUgGG- -5'
5539 5' -58.2 NC_001806.1 + 23295 0.69 0.611319
Target:  5'- cGCaAGAGUCccgGCCCGGCccGGCcGCCCg -3'
miRNA:   3'- -UGgUCUCGGa--CGGGUUGuaCCG-UGGG- -5'
5539 5' -58.2 NC_001806.1 + 23434 0.74 0.352898
Target:  5'- gGCCcGAGCCcgcccccGCCCAGCccgcGGCGCCCc -3'
miRNA:   3'- -UGGuCUCGGa------CGGGUUGua--CCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 23564 0.69 0.611319
Target:  5'- cCCGGGGCCcaGCCacACGgcGGCGCCCg -3'
miRNA:   3'- uGGUCUCGGa-CGGguUGUa-CCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 23831 0.67 0.770469
Target:  5'- cGCCucGGGCCcgcUGCgCC-GCAUGGCGgCCu -3'
miRNA:   3'- -UGGu-CUCGG---ACG-GGuUGUACCGUgGG- -5'
5539 5' -58.2 NC_001806.1 + 24536 0.68 0.682445
Target:  5'- gGCCGGgcggcGGCCUcgggGaccaCCGACGccaUGGCGCCCg -3'
miRNA:   3'- -UGGUC-----UCGGA----Cg---GGUUGU---ACCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 24629 0.73 0.396763
Target:  5'- cGCUGGGGCCUgggcgcgccgcugcgGCCCGuguACGUGGCGCUg -3'
miRNA:   3'- -UGGUCUCGGA---------------CGGGU---UGUACCGUGGg -5'
5539 5' -58.2 NC_001806.1 + 26622 0.66 0.77976
Target:  5'- gGCCGGAcaGCCccccGCCCGAgccGGCGCCa -3'
miRNA:   3'- -UGGUCU--CGGa---CGGGUUguaCCGUGGg -5'
5539 5' -58.2 NC_001806.1 + 26682 0.69 0.621496
Target:  5'- gGCCccGGCCcccaccGCCCGGCGUGG-GCCCg -3'
miRNA:   3'- -UGGucUCGGa-----CGGGUUGUACCgUGGG- -5'
5539 5' -58.2 NC_001806.1 + 27090 0.68 0.702523
Target:  5'- gGCCcgcGGAGCCgGCCCGGCGaacucGGUcuaacguuacACCCg -3'
miRNA:   3'- -UGG---UCUCGGaCGGGUUGUa----CCG----------UGGG- -5'
5539 5' -58.2 NC_001806.1 + 27329 0.66 0.788919
Target:  5'- uUCGGGGCCcgGCCCAuug-GGCgggaguuaccGCCCa -3'
miRNA:   3'- uGGUCUCGGa-CGGGUuguaCCG----------UGGG- -5'
5539 5' -58.2 NC_001806.1 + 30261 0.67 0.741901
Target:  5'- uCCGGGGCCcgGCCCccGCGccccGGCcCCCg -3'
miRNA:   3'- uGGUCUCGGa-CGGGu-UGUa---CCGuGGG- -5'
5539 5' -58.2 NC_001806.1 + 30942 0.67 0.774201
Target:  5'- cGCUA---CCUGCCCAucucgggggucucuaGCGUGGuCGCCCu -3'
miRNA:   3'- -UGGUcucGGACGGGU---------------UGUACC-GUGGG- -5'
5539 5' -58.2 NC_001806.1 + 31245 0.69 0.652041
Target:  5'- gACCAGGGCa--CCCuagugGGCGCCCu -3'
miRNA:   3'- -UGGUCUCGgacGGGuuguaCCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 31765 0.69 0.63168
Target:  5'- -aCAGAGCCgcgGCCCg----GGCugCCu -3'
miRNA:   3'- ugGUCUCGGa--CGGGuuguaCCGugGG- -5'
5539 5' -58.2 NC_001806.1 + 32964 0.69 0.63168
Target:  5'- gGCCGGGGCCccuuggGUCCGcCggGGC-CCCg -3'
miRNA:   3'- -UGGUCUCGGa-----CGGGUuGuaCCGuGGG- -5'
5539 5' -58.2 NC_001806.1 + 34409 0.67 0.761057
Target:  5'- gGCCGG-GCCggGCCgGGCcgGGCcggGCCg -3'
miRNA:   3'- -UGGUCuCGGa-CGGgUUGuaCCG---UGGg -5'
5539 5' -58.2 NC_001806.1 + 35536 0.68 0.682445
Target:  5'- cGCCA-AGCC-GCCCAGCGagccgcucgGcGCGCCCg -3'
miRNA:   3'- -UGGUcUCGGaCGGGUUGUa--------C-CGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 35596 0.67 0.722365
Target:  5'- cGCCGGAGUUuugGCCCuGGCGgguuauUGGCAaCCCc -3'
miRNA:   3'- -UGGUCUCGGa--CGGG-UUGU------ACCGU-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.