miRNA display CGI


Results 21 - 40 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5539 5' -58.2 NC_001806.1 + 132727 0.74 0.337546
Target:  5'- cCCGcGAGCUgGCCCGGCGUGGC-CUCg -3'
miRNA:   3'- uGGU-CUCGGaCGGGUUGUACCGuGGG- -5'
5539 5' -58.2 NC_001806.1 + 132509 0.66 0.786186
Target:  5'- cCCGGGGCCcuggcccccgucuuUGCCUuuC-UGGgGCCCg -3'
miRNA:   3'- uGGUCUCGG--------------ACGGGuuGuACCgUGGG- -5'
5539 5' -58.2 NC_001806.1 + 132357 0.68 0.67234
Target:  5'- ---uGGGCCUGCggCCAcGCG-GGCACCCg -3'
miRNA:   3'- ugguCUCGGACG--GGU-UGUaCCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 131588 0.72 0.4549
Target:  5'- cACCGG-GCCcgGCCaggcacggCAGCAUGGgACCCa -3'
miRNA:   3'- -UGGUCuCGGa-CGG--------GUUGUACCgUGGG- -5'
5539 5' -58.2 NC_001806.1 + 131376 0.66 0.81466
Target:  5'- cACCGaGGCCUgGCCCAugauGCAgggGGCggugaacuuuagcACCCu -3'
miRNA:   3'- -UGGUcUCGGA-CGGGU----UGUa--CCG-------------UGGG- -5'
5539 5' -58.2 NC_001806.1 + 130635 0.68 0.702523
Target:  5'- uGCUGGAgGCCUGUCUccgcguuccCAUGGCcACCCg -3'
miRNA:   3'- -UGGUCU-CGGACGGGuu-------GUACCG-UGGG- -5'
5539 5' -58.2 NC_001806.1 + 128034 0.68 0.662203
Target:  5'- gGCCAG-GCCgacgaUGCCCGugGcGGCcacgGCCCc -3'
miRNA:   3'- -UGGUCuCGG-----ACGGGUugUaCCG----UGGG- -5'
5539 5' -58.2 NC_001806.1 + 127059 0.68 0.712478
Target:  5'- uCCGGGGCCcgGCCCuGCu--GCugCCg -3'
miRNA:   3'- uGGUCUCGGa-CGGGuUGuacCGugGG- -5'
5539 5' -58.2 NC_001806.1 + 126892 0.7 0.550831
Target:  5'- cUCGGGGCCgcagGaCCCAGCAaGGCGUCCa -3'
miRNA:   3'- uGGUCUCGGa---C-GGGUUGUaCCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 125843 0.69 0.610302
Target:  5'- cGCCGcGGGCC--CCCGGCcgccgcggacgccGUGGCGCCCc -3'
miRNA:   3'- -UGGU-CUCGGacGGGUUG-------------UACCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 124896 0.67 0.752488
Target:  5'- cGCCGGAcuucGCCcugGCCCugcucgccuaucgcuGCGUGcuGCACCCa -3'
miRNA:   3'- -UGGUCU----CGGa--CGGGu--------------UGUAC--CGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 121408 0.67 0.741901
Target:  5'- aGCCGGGcgcgugcugcGCCUuggGCCCGgggGCcugGUGGCACCUc -3'
miRNA:   3'- -UGGUCU----------CGGA---CGGGU---UG---UACCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 120812 0.68 0.701524
Target:  5'- cGCCucuGGGGUUUGCCCuccccccgcccccGGCAUGGCGCa- -3'
miRNA:   3'- -UGG---UCUCGGACGGG-------------UUGUACCGUGgg -5'
5539 5' -58.2 NC_001806.1 + 119922 0.68 0.712478
Target:  5'- gACCGaGGCCUGCgCCGcagaacGCGUcGuGCGCCCc -3'
miRNA:   3'- -UGGUcUCGGACG-GGU------UGUA-C-CGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 119271 0.69 0.611319
Target:  5'- aGCCcuuGGCCcgGCCCcACGcgggGGCGCCCg -3'
miRNA:   3'- -UGGuc-UCGGa-CGGGuUGUa---CCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 117690 0.67 0.761057
Target:  5'- aGCuCGGGGCCcgaGCCCG-CGUcGGCcCCCu -3'
miRNA:   3'- -UG-GUCUCGGa--CGGGUuGUA-CCGuGGG- -5'
5539 5' -58.2 NC_001806.1 + 116340 0.71 0.492293
Target:  5'- aAUCGucGCCUGCCCccugGACGUGGgccuCACCCa -3'
miRNA:   3'- -UGGUcuCGGACGGG----UUGUACC----GUGGG- -5'
5539 5' -58.2 NC_001806.1 + 115084 0.71 0.505715
Target:  5'- cGCCuGGGGCCgGCCCAGCccGuccccguguucggguGCGCCCa -3'
miRNA:   3'- -UGG-UCUCGGaCGGGUUGuaC---------------CGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 114511 0.71 0.492293
Target:  5'- cGCCGGGGCCga-CC-ACGUGGCgaacgcGCCCa -3'
miRNA:   3'- -UGGUCUCGGacgGGuUGUACCG------UGGG- -5'
5539 5' -58.2 NC_001806.1 + 113401 0.66 0.801506
Target:  5'- cCCGGGGCCUGgagcugggggugggaCgCCAcgcCAUGGCcCCCg -3'
miRNA:   3'- uGGUCUCGGAC---------------G-GGUu--GUACCGuGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.