miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5539 5' -58.2 NC_001806.1 + 151285 0.65 0.821527
Target:  5'- gGCCGGGGCCgggggGCggCGGCGgugggccgggccucUGGCGCCg -3'
miRNA:   3'- -UGGUCUCGGa----CGg-GUUGU--------------ACCGUGGg -5'
5539 5' -58.2 NC_001806.1 + 151002 0.69 0.630661
Target:  5'- cGCCAGgcgggcGGCCgagGCCCAgaccaccAgGUGGCgcACCCg -3'
miRNA:   3'- -UGGUC------UCGGa--CGGGU-------UgUACCG--UGGG- -5'
5539 5' -58.2 NC_001806.1 + 150882 0.67 0.732176
Target:  5'- gGCCAGGGCCcggGCaCgGGCcucgGGC-CCCa -3'
miRNA:   3'- -UGGUCUCGGa--CG-GgUUGua--CCGuGGG- -5'
5539 5' -58.2 NC_001806.1 + 149748 0.69 0.641865
Target:  5'- --uGGcGCCc-CCCAAUAUGGCGCCCc -3'
miRNA:   3'- uggUCuCGGacGGGUUGUACCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 149716 0.76 0.287695
Target:  5'- uCgGGGGUCc-CCCAACAUGGCGCCCc -3'
miRNA:   3'- uGgUCUCGGacGGGUUGUACCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 149676 0.68 0.682445
Target:  5'- gUgGGGGUCc-CCCAACAUGGCGgCCg -3'
miRNA:   3'- uGgUCUCGGacGGGUUGUACCGUgGG- -5'
5539 5' -58.2 NC_001806.1 + 149617 0.71 0.501864
Target:  5'- -aCGGGGUUccacGCCCccuAACAUGGCGCCCc -3'
miRNA:   3'- ugGUCUCGGa---CGGG---UUGUACCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 149560 0.69 0.652041
Target:  5'- gUCAGGGgguuCCgcacccCCUAACAUGGCGCCCc -3'
miRNA:   3'- uGGUCUC----GGac----GGGUUGUACCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 147794 0.66 0.797939
Target:  5'- gGCgGGGGgCggaGCCUGGCAUgGGCGCCg -3'
miRNA:   3'- -UGgUCUCgGa--CGGGUUGUA-CCGUGGg -5'
5539 5' -58.2 NC_001806.1 + 146853 0.7 0.59102
Target:  5'- aGCCGGGGaCCgcgGCCCGcaGCcgGGuCGCCa -3'
miRNA:   3'- -UGGUCUC-GGa--CGGGU--UGuaCC-GUGGg -5'
5539 5' -58.2 NC_001806.1 + 146218 1.1 0.001334
Target:  5'- cACCAGAGCCUGCCCAACAUGGCACCCc -3'
miRNA:   3'- -UGGUCUCGGACGGGUUGUACCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 145010 0.66 0.815525
Target:  5'- cCCGGGGCCccacaacgGCCCGgcGCAUGcGCugUg -3'
miRNA:   3'- uGGUCUCGGa-------CGGGU--UGUAC-CGugGg -5'
5539 5' -58.2 NC_001806.1 + 144948 0.7 0.550831
Target:  5'- cGCCAacGGCCgGCCCc-CGUGGCgGCCCg -3'
miRNA:   3'- -UGGUc-UCGGaCGGGuuGUACCG-UGGG- -5'
5539 5' -58.2 NC_001806.1 + 143541 0.68 0.671328
Target:  5'- cCCGGcccGGCCcgGCCCGGCccGGCcaccgccGCCCa -3'
miRNA:   3'- uGGUC---UCGGa-CGGGUUGuaCCG-------UGGG- -5'
5539 5' -58.2 NC_001806.1 + 139756 0.69 0.611319
Target:  5'- gACCAGcGCaCUGCCCGACGccGCGCa- -3'
miRNA:   3'- -UGGUCuCG-GACGGGUUGUacCGUGgg -5'
5539 5' -58.2 NC_001806.1 + 139429 0.67 0.770469
Target:  5'- cCCAGGGCCUuaGCCUgGACAaGGuCGCCa -3'
miRNA:   3'- uGGUCUCGGA--CGGG-UUGUaCC-GUGGg -5'
5539 5' -58.2 NC_001806.1 + 135752 0.67 0.741901
Target:  5'- aACCAcGGCCgugcggaagGCCUGGCGaagcugcGGCGCCCg -3'
miRNA:   3'- -UGGUcUCGGa--------CGGGUUGUa------CCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 134927 0.67 0.751531
Target:  5'- cCCGGcgauGGCCUGCUUgaggAugGUGGCGgCCg -3'
miRNA:   3'- uGGUC----UCGGACGGG----UugUACCGUgGG- -5'
5539 5' -58.2 NC_001806.1 + 133272 0.7 0.550831
Target:  5'- gGCCAacGCC-GUCCGGCugcGGCACCCa -3'
miRNA:   3'- -UGGUcuCGGaCGGGUUGua-CCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 132759 0.67 0.741901
Target:  5'- aGCCGGAuGCCuccUGCCCGcggugcgggagGCGguggcgcggUGGCAUCCc -3'
miRNA:   3'- -UGGUCU-CGG---ACGGGU-----------UGU---------ACCGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.