Results 41 - 60 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5539 | 5' | -58.2 | NC_001806.1 | + | 41209 | 0.73 | 0.427889 |
Target: 5'- aGCCAGAGCCccgcGCCUAAaGUGGC-CCa -3' miRNA: 3'- -UGGUCUCGGa---CGGGUUgUACCGuGGg -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 42914 | 0.67 | 0.741901 |
Target: 5'- cCCAuuuAGCCcGCCCGACGcuUGGUagagcGCCCg -3' miRNA: 3'- uGGUc--UCGGaCGGGUUGU--ACCG-----UGGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 43500 | 0.66 | 0.788919 |
Target: 5'- -aCGGGGCCguggcgGCCCAucaggACAagaugcGGCGCCUg -3' miRNA: 3'- ugGUCUCGGa-----CGGGU-----UGUa-----CCGUGGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 45377 | 0.66 | 0.797939 |
Target: 5'- gGCCAaauGUCUGCCCcgggGGCccUGGUGCCCu -3' miRNA: 3'- -UGGUcu-CGGACGGG----UUGu-ACCGUGGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 45931 | 0.68 | 0.67234 |
Target: 5'- cGCCuGAcaCCU-CCCGcCGUGGCGCCCu -3' miRNA: 3'- -UGGuCUc-GGAcGGGUuGUACCGUGGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 46109 | 0.7 | 0.57084 |
Target: 5'- cCCGGGGCCUGCgCg----GGCGCCUc -3' miRNA: 3'- uGGUCUCGGACGgGuuguaCCGUGGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 47259 | 0.7 | 0.580912 |
Target: 5'- cGCCuGAGCCagGCCCAGCucAUGcccucccCACCCa -3' miRNA: 3'- -UGGuCUCGGa-CGGGUUG--UACc------GUGGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 48075 | 0.66 | 0.810315 |
Target: 5'- aGCCAGGGgcgccguugacgaccCCU-CCCAcccuGCAUGGCaaccagGCCCg -3' miRNA: 3'- -UGGUCUC---------------GGAcGGGU----UGUACCG------UGGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 52020 | 0.66 | 0.812927 |
Target: 5'- cGCCGGuuCCUcccgcucggcggcaGCCCGGa--GGCGCCCg -3' miRNA: 3'- -UGGUCucGGA--------------CGGGUUguaCCGUGGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 52083 | 0.68 | 0.703521 |
Target: 5'- gACCGGGGUCccagcggcacgaccgGCuCCAugcaguGCAUGGCGCUCa -3' miRNA: 3'- -UGGUCUCGGa--------------CG-GGU------UGUACCGUGGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 52557 | 0.7 | 0.550831 |
Target: 5'- -gCGGGGCCUcCCCcggacGACAUGGCcagcgGCCCg -3' miRNA: 3'- ugGUCUCGGAcGGG-----UUGUACCG-----UGGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 54791 | 0.75 | 0.322686 |
Target: 5'- cACCAGGGCCaGCCCG--GUGGCAUUg -3' miRNA: 3'- -UGGUCUCGGaCGGGUugUACCGUGGg -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 56299 | 0.74 | 0.352898 |
Target: 5'- cGCCGGAGCCccagcaccUGCgCCAACGaaauccacacGGCACCCc -3' miRNA: 3'- -UGGUCUCGG--------ACG-GGUUGUa---------CCGUGGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 57045 | 0.69 | 0.601158 |
Target: 5'- cCCGGGGCCgggGCCCccggcugcguGCcgGGCucCCCg -3' miRNA: 3'- uGGUCUCGGa--CGGGu---------UGuaCCGu-GGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 58695 | 0.66 | 0.788009 |
Target: 5'- -aCGGGGCCUgGCCCGugAUcGCcaacuccACCCg -3' miRNA: 3'- ugGUCUCGGA-CGGGUugUAcCG-------UGGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 59617 | 0.73 | 0.419097 |
Target: 5'- cGCCGGGGCCUugggGcCCCGGCcgGGUACUUc -3' miRNA: 3'- -UGGUCUCGGA----C-GGGUUGuaCCGUGGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 61439 | 0.68 | 0.67234 |
Target: 5'- cGCCAGcGCCgccggGCUCAggAUAUGGCugUCc -3' miRNA: 3'- -UGGUCuCGGa----CGGGU--UGUACCGugGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 64901 | 0.66 | 0.77976 |
Target: 5'- gACCAGcGCCgGCCUcuGGCGUcGGCGCg- -3' miRNA: 3'- -UGGUCuCGGaCGGG--UUGUA-CCGUGgg -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 67184 | 0.67 | 0.751531 |
Target: 5'- cCCAG-GCCUcGCCCAGCcgcucGGuCugCCg -3' miRNA: 3'- uGGUCuCGGA-CGGGUUGua---CC-GugGG- -5' |
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5539 | 5' | -58.2 | NC_001806.1 | + | 67359 | 0.77 | 0.23235 |
Target: 5'- gAUCAGGGCC-GCCCccccgcGCAUGGUGCCCc -3' miRNA: 3'- -UGGUCUCGGaCGGGu-----UGUACCGUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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