miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5540 5' -53.5 NC_001806.1 + 135785 0.65 0.960783
Target:  5'- -cGGCGCCCGCccccccugguccugGCCCGcagACCCgcgGCUGUu -3'
miRNA:   3'- aaUUGUGGGUG--------------UGGGU---UGGG---UGACAc -5'
5540 5' -53.5 NC_001806.1 + 26646 0.66 0.95817
Target:  5'- -cGGCGCCagAgGCCCGGCCCACc--- -3'
miRNA:   3'- aaUUGUGGg-UgUGGGUUGGGUGacac -5'
5540 5' -53.5 NC_001806.1 + 101140 0.66 0.95817
Target:  5'- -cAGCACCCGC-CCCAcCUCGCa--- -3'
miRNA:   3'- aaUUGUGGGUGuGGGUuGGGUGacac -5'
5540 5' -53.5 NC_001806.1 + 46123 0.66 0.95817
Target:  5'- -gGGCGCCUcCGCC--ACCCGCUGg- -3'
miRNA:   3'- aaUUGUGGGuGUGGguUGGGUGACac -5'
5540 5' -53.5 NC_001806.1 + 52157 0.66 0.95817
Target:  5'- ---cCACCUgacGCGCCUAGCCaacCUGUGg -3'
miRNA:   3'- aauuGUGGG---UGUGGGUUGGgu-GACAC- -5'
5540 5' -53.5 NC_001806.1 + 24731 0.66 0.957015
Target:  5'- --uGCGCCCGCGCCCugcuggagcccgacGAcgacgccccCCCGCUGg- -3'
miRNA:   3'- aauUGUGGGUGUGGG--------------UU---------GGGUGACac -5'
5540 5' -53.5 NC_001806.1 + 65589 0.66 0.954234
Target:  5'- -aAGCACCauCACGCCauuGACUCGCUGg- -3'
miRNA:   3'- aaUUGUGG--GUGUGGg--UUGGGUGACac -5'
5540 5' -53.5 NC_001806.1 + 67862 0.66 0.954234
Target:  5'- --cGCACCCACGCCguccgggcuGCCCGCa--- -3'
miRNA:   3'- aauUGUGGGUGUGGgu-------UGGGUGacac -5'
5540 5' -53.5 NC_001806.1 + 5045 0.66 0.950055
Target:  5'- --cGCGCCC-CACCCGAgggcccCCCGCUcGUc -3'
miRNA:   3'- aauUGUGGGuGUGGGUU------GGGUGA-CAc -5'
5540 5' -53.5 NC_001806.1 + 145447 0.66 0.945629
Target:  5'- gUAACccCCCACGCCaauGACCCACg--- -3'
miRNA:   3'- aAUUGu-GGGUGUGGg--UUGGGUGacac -5'
5540 5' -53.5 NC_001806.1 + 23817 0.66 0.945629
Target:  5'- uUUGGCcCCCugcGCGCCUcgGGCCCGCUGc- -3'
miRNA:   3'- -AAUUGuGGG---UGUGGG--UUGGGUGACac -5'
5540 5' -53.5 NC_001806.1 + 35727 0.66 0.945629
Target:  5'- ---cCACCCcccaACCUAugCCACUGUc -3'
miRNA:   3'- aauuGUGGGug--UGGGUugGGUGACAc -5'
5540 5' -53.5 NC_001806.1 + 14777 0.66 0.940952
Target:  5'- --cGC-CCCAUACCCuACCCGCg--- -3'
miRNA:   3'- aauUGuGGGUGUGGGuUGGGUGacac -5'
5540 5' -53.5 NC_001806.1 + 130146 0.66 0.940471
Target:  5'- -aGugGCCCGCGcaguucuCCCAggucacaaACCUGCUGUGu -3'
miRNA:   3'- aaUugUGGGUGU-------GGGU--------UGGGUGACAC- -5'
5540 5' -53.5 NC_001806.1 + 62646 0.67 0.936024
Target:  5'- -gAGCGCCUGCGCCaCGGaCCACUGc- -3'
miRNA:   3'- aaUUGUGGGUGUGG-GUUgGGUGACac -5'
5540 5' -53.5 NC_001806.1 + 36872 0.67 0.936024
Target:  5'- -cGugACCCACGCCCcGCCgGCc--- -3'
miRNA:   3'- aaUugUGGGUGUGGGuUGGgUGacac -5'
5540 5' -53.5 NC_001806.1 + 144310 0.67 0.936024
Target:  5'- -cGACACCCcCcCCCcGCCCG-UGUGg -3'
miRNA:   3'- aaUUGUGGGuGuGGGuUGGGUgACAC- -5'
5540 5' -53.5 NC_001806.1 + 27313 0.67 0.936024
Target:  5'- -cAGCGUCCGCcgagucuucgggGCCCGGCCCAUUGg- -3'
miRNA:   3'- aaUUGUGGGUG------------UGGGUUGGGUGACac -5'
5540 5' -53.5 NC_001806.1 + 8491 0.67 0.936024
Target:  5'- ---cCACCCACucCCCAcccACCCACUc-- -3'
miRNA:   3'- aauuGUGGGUGu-GGGU---UGGGUGAcac -5'
5540 5' -53.5 NC_001806.1 + 8431 0.67 0.936024
Target:  5'- ---cCACCCACucCCCAcccACCCACUc-- -3'
miRNA:   3'- aauuGUGGGUGu-GGGU---UGGGUGAcac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.