miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5540 5' -53.5 NC_001806.1 + 5045 0.66 0.950055
Target:  5'- --cGCGCCC-CACCCGAgggcccCCCGCUcGUc -3'
miRNA:   3'- aauUGUGGGuGUGGGUU------GGGUGA-CAc -5'
5540 5' -53.5 NC_001806.1 + 7595 0.72 0.697168
Target:  5'- ---cCGCCCACcggaaGCCCAACCCACa--- -3'
miRNA:   3'- aauuGUGGGUG-----UGGGUUGGGUGacac -5'
5540 5' -53.5 NC_001806.1 + 8401 0.67 0.936024
Target:  5'- ---cCACCCACucCCCAcccACCCACUc-- -3'
miRNA:   3'- aauuGUGGGUGu-GGGU---UGGGUGAcac -5'
5540 5' -53.5 NC_001806.1 + 8431 0.67 0.936024
Target:  5'- ---cCACCCACucCCCAcccACCCACUc-- -3'
miRNA:   3'- aauuGUGGGUGu-GGGU---UGGGUGAcac -5'
5540 5' -53.5 NC_001806.1 + 8461 0.67 0.936024
Target:  5'- ---cCACCCACucCCCAcccACCCACUc-- -3'
miRNA:   3'- aauuGUGGGUGu-GGGU---UGGGUGAcac -5'
5540 5' -53.5 NC_001806.1 + 8491 0.67 0.936024
Target:  5'- ---cCACCCACucCCCAcccACCCACUc-- -3'
miRNA:   3'- aauuGUGGGUGu-GGGU---UGGGUGAcac -5'
5540 5' -53.5 NC_001806.1 + 9692 0.7 0.796555
Target:  5'- --cACGCCCACACCgaCAACCC-CaGUGc -3'
miRNA:   3'- aauUGUGGGUGUGG--GUUGGGuGaCAC- -5'
5540 5' -53.5 NC_001806.1 + 14777 0.66 0.940952
Target:  5'- --cGC-CCCAUACCCuACCCGCg--- -3'
miRNA:   3'- aauUGuGGGUGUGGGuUGGGUGacac -5'
5540 5' -53.5 NC_001806.1 + 16818 0.68 0.887465
Target:  5'- aUGACACagGCGCUCGGCCuCGCUGg- -3'
miRNA:   3'- aAUUGUGggUGUGGGUUGG-GUGACac -5'
5540 5' -53.5 NC_001806.1 + 23384 0.72 0.697168
Target:  5'- -gGACGCCCGCGCCCcccucCCCGCg--- -3'
miRNA:   3'- aaUUGUGGGUGUGGGuu---GGGUGacac -5'
5540 5' -53.5 NC_001806.1 + 23443 0.73 0.665756
Target:  5'- ---cCGCCCcCGCCCAGCCCGCg--- -3'
miRNA:   3'- aauuGUGGGuGUGGGUUGGGUGacac -5'
5540 5' -53.5 NC_001806.1 + 23584 0.68 0.887465
Target:  5'- -cGGCGCCCGCGgCCGccgcccuggagGCCUACUGc- -3'
miRNA:   3'- aaUUGUGGGUGUgGGU-----------UGGGUGACac -5'
5540 5' -53.5 NC_001806.1 + 23817 0.66 0.945629
Target:  5'- uUUGGCcCCCugcGCGCCUcgGGCCCGCUGc- -3'
miRNA:   3'- -AAUUGuGGG---UGUGGG--UUGGGUGACac -5'
5540 5' -53.5 NC_001806.1 + 24002 0.7 0.814848
Target:  5'- cUGGCgGCCCugG-CCAACCgGCUGUGc -3'
miRNA:   3'- aAUUG-UGGGugUgGGUUGGgUGACAC- -5'
5540 5' -53.5 NC_001806.1 + 24731 0.66 0.957015
Target:  5'- --uGCGCCCGCGCCCugcuggagcccgacGAcgacgccccCCCGCUGg- -3'
miRNA:   3'- aauUGUGGGUGUGGG--------------UU---------GGGUGACac -5'
5540 5' -53.5 NC_001806.1 + 26462 0.68 0.879549
Target:  5'- gUAACcUCCACGCCCAacucggaACCCGCgGUc -3'
miRNA:   3'- aAUUGuGGGUGUGGGU-------UGGGUGaCAc -5'
5540 5' -53.5 NC_001806.1 + 26646 0.66 0.95817
Target:  5'- -cGGCGCCagAgGCCCGGCCCACc--- -3'
miRNA:   3'- aaUUGUGGg-UgUGGGUUGGGUGacac -5'
5540 5' -53.5 NC_001806.1 + 27313 0.67 0.936024
Target:  5'- -cAGCGUCCGCcgagucuucgggGCCCGGCCCAUUGg- -3'
miRNA:   3'- aaUUGUGGGUG------------UGGGUUGGGUGACac -5'
5540 5' -53.5 NC_001806.1 + 29775 0.67 0.913763
Target:  5'- -gGACGcCCCGCGCCCc-CCCACg--- -3'
miRNA:   3'- aaUUGU-GGGUGUGGGuuGGGUGacac -5'
5540 5' -53.5 NC_001806.1 + 34700 0.7 0.814848
Target:  5'- ---cCGCCCACAucccccCCCAACCCGCa--- -3'
miRNA:   3'- aauuGUGGGUGU------GGGUUGGGUGacac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.