miRNA display CGI


Results 21 - 40 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5540 5' -53.5 NC_001806.1 + 35727 0.66 0.945629
Target:  5'- ---cCACCCcccaACCUAugCCACUGUc -3'
miRNA:   3'- aauuGUGGGug--UGGGUugGGUGACAc -5'
5540 5' -53.5 NC_001806.1 + 36872 0.67 0.936024
Target:  5'- -cGugACCCACGCCCcGCCgGCc--- -3'
miRNA:   3'- aaUugUGGGUGUGGGuUGGgUGacac -5'
5540 5' -53.5 NC_001806.1 + 43387 0.67 0.91971
Target:  5'- -cGACACCCgACGCCUcgugaaGGCCCGCg--- -3'
miRNA:   3'- aaUUGUGGG-UGUGGG------UUGGGUGacac -5'
5540 5' -53.5 NC_001806.1 + 45488 0.69 0.849241
Target:  5'- -gGGCACgCCugAaCCC-GCCCugUGUGg -3'
miRNA:   3'- aaUUGUG-GGugU-GGGuUGGGugACAC- -5'
5540 5' -53.5 NC_001806.1 + 46123 0.66 0.95817
Target:  5'- -gGGCGCCUcCGCC--ACCCGCUGg- -3'
miRNA:   3'- aaUUGUGGGuGUGGguUGGGUGACac -5'
5540 5' -53.5 NC_001806.1 + 47222 0.69 0.857333
Target:  5'- -aAACACCCcgGCgGCCCc-CCCGCUGUa -3'
miRNA:   3'- aaUUGUGGG--UG-UGGGuuGGGUGACAc -5'
5540 5' -53.5 NC_001806.1 + 48750 0.7 0.805785
Target:  5'- -aGACGggaCCGCGCaaCCAACCCACUGg- -3'
miRNA:   3'- aaUUGUg--GGUGUG--GGUUGGGUGACac -5'
5540 5' -53.5 NC_001806.1 + 49007 0.75 0.529615
Target:  5'- -cGGCACCUAC-CCCGGCCUccauccgcGCUGUGg -3'
miRNA:   3'- aaUUGUGGGUGuGGGUUGGG--------UGACAC- -5'
5540 5' -53.5 NC_001806.1 + 52157 0.66 0.95817
Target:  5'- ---cCACCUgacGCGCCUAGCCaacCUGUGg -3'
miRNA:   3'- aauuGUGGG---UGUGGGUUGGgu-GACAC- -5'
5540 5' -53.5 NC_001806.1 + 53034 0.68 0.90111
Target:  5'- ---cCACCCACGCCgccuCGGCCCGCg--- -3'
miRNA:   3'- aauuGUGGGUGUGG----GUUGGGUGacac -5'
5540 5' -53.5 NC_001806.1 + 62646 0.67 0.936024
Target:  5'- -gAGCGCCUGCGCCaCGGaCCACUGc- -3'
miRNA:   3'- aaUUGUGGGUGUGG-GUUgGGUGACac -5'
5540 5' -53.5 NC_001806.1 + 65589 0.66 0.954234
Target:  5'- -aAGCACCauCACGCCauuGACUCGCUGg- -3'
miRNA:   3'- aaUUGUGG--GUGUGGg--UUGGGUGACac -5'
5540 5' -53.5 NC_001806.1 + 67000 0.68 0.88028
Target:  5'- --cGCGCCCcCACCCGcguCCCGCgGUa -3'
miRNA:   3'- aauUGUGGGuGUGGGUu--GGGUGaCAc -5'
5540 5' -53.5 NC_001806.1 + 67862 0.66 0.954234
Target:  5'- --cGCACCCACGCCguccgggcuGCCCGCa--- -3'
miRNA:   3'- aauUGUGGGUGUGGgu-------UGGGUGacac -5'
5540 5' -53.5 NC_001806.1 + 72216 0.67 0.930841
Target:  5'- -cGACACCgCAUACCUuuuuGACCCGCa--- -3'
miRNA:   3'- aaUUGUGG-GUGUGGG----UUGGGUGacac -5'
5540 5' -53.5 NC_001806.1 + 77397 0.69 0.865208
Target:  5'- -cGGCGgCCGCGCCCGcGCCCcuGCUcGUGg -3'
miRNA:   3'- aaUUGUgGGUGUGGGU-UGGG--UGA-CAC- -5'
5540 5' -53.5 NC_001806.1 + 77440 0.71 0.728054
Target:  5'- -aGACGCCCGCGCCCGGgcguccgcCCCACc--- -3'
miRNA:   3'- aaUUGUGGGUGUGGGUU--------GGGUGacac -5'
5540 5' -53.5 NC_001806.1 + 78178 0.7 0.823733
Target:  5'- cUGAC-CCCGCAUCCAgacGCCCGCa--- -3'
miRNA:   3'- aAUUGuGGGUGUGGGU---UGGGUGacac -5'
5540 5' -53.5 NC_001806.1 + 78927 0.68 0.907562
Target:  5'- -cGGC-CCCuCGCCCGggGCCCGCcGUGu -3'
miRNA:   3'- aaUUGuGGGuGUGGGU--UGGGUGaCAC- -5'
5540 5' -53.5 NC_001806.1 + 85715 0.68 0.88028
Target:  5'- gUAGCGCCgGCACCCAccGCCCcgaaccCUGc- -3'
miRNA:   3'- aAUUGUGGgUGUGGGU--UGGGu-----GACac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.