miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5540 5' -53.5 NC_001806.1 + 118580 0.69 0.832433
Target:  5'- ----aACCCACGCCCuuCCCGCg--- -3'
miRNA:   3'- aauugUGGGUGUGGGuuGGGUGacac -5'
5540 5' -53.5 NC_001806.1 + 45488 0.69 0.849241
Target:  5'- -gGGCACgCCugAaCCC-GCCCugUGUGg -3'
miRNA:   3'- aaUUGUG-GGugU-GGGuUGGGugACAC- -5'
5540 5' -53.5 NC_001806.1 + 111939 0.69 0.849241
Target:  5'- -cGACgGCCCGCACCCcaucgagcAACCCACa--- -3'
miRNA:   3'- aaUUG-UGGGUGUGGG--------UUGGGUGacac -5'
5540 5' -53.5 NC_001806.1 + 47222 0.69 0.857333
Target:  5'- -aAACACCCcgGCgGCCCc-CCCGCUGUa -3'
miRNA:   3'- aaUUGUGGG--UG-UGGGuuGGGUGACAc -5'
5540 5' -53.5 NC_001806.1 + 107851 0.69 0.857333
Target:  5'- -cGACGCCCACuguuCCUAACCUACc--- -3'
miRNA:   3'- aaUUGUGGGUGu---GGGUUGGGUGacac -5'
5540 5' -53.5 NC_001806.1 + 107396 0.69 0.86051
Target:  5'- --cGCGCCCGCcggagccuucugauaGCCuCGGCCCugUGUa -3'
miRNA:   3'- aauUGUGGGUG---------------UGG-GUUGGGugACAc -5'
5540 5' -53.5 NC_001806.1 + 77397 0.69 0.865208
Target:  5'- -cGGCGgCCGCGCCCGcGCCCcuGCUcGUGg -3'
miRNA:   3'- aaUUGUgGGUGUGGGU-UGGG--UGA-CAC- -5'
5540 5' -53.5 NC_001806.1 + 143955 0.68 0.872859
Target:  5'- ---cCGCCCACGCCCccGCCC-CUGc- -3'
miRNA:   3'- aauuGUGGGUGUGGGu-UGGGuGACac -5'
5540 5' -53.5 NC_001806.1 + 26462 0.68 0.879549
Target:  5'- gUAACcUCCACGCCCAacucggaACCCGCgGUc -3'
miRNA:   3'- aAUUGuGGGUGUGGGU-------UGGGUGaCAc -5'
5540 5' -53.5 NC_001806.1 + 67000 0.68 0.88028
Target:  5'- --cGCGCCCcCACCCGcguCCCGCgGUa -3'
miRNA:   3'- aauUGUGGGuGUGGGUu--GGGUGaCAc -5'
5540 5' -53.5 NC_001806.1 + 85715 0.68 0.88028
Target:  5'- gUAGCGCCgGCACCCAccGCCCcgaaccCUGc- -3'
miRNA:   3'- aAUUGUGGgUGUGGGU--UGGGu-----GACac -5'
5540 5' -53.5 NC_001806.1 + 23584 0.68 0.887465
Target:  5'- -cGGCGCCCGCGgCCGccgcccuggagGCCUACUGc- -3'
miRNA:   3'- aaUUGUGGGUGUgGGU-----------UGGGUGACac -5'
5540 5' -53.5 NC_001806.1 + 16818 0.68 0.887465
Target:  5'- aUGACACagGCGCUCGGCCuCGCUGg- -3'
miRNA:   3'- aAUUGUGggUGUGGGUUGG-GUGACac -5'
5540 5' -53.5 NC_001806.1 + 93344 0.68 0.89441
Target:  5'- -gGGC-CCCGCACCCAGCa-GCUGc- -3'
miRNA:   3'- aaUUGuGGGUGUGGGUUGggUGACac -5'
5540 5' -53.5 NC_001806.1 + 53034 0.68 0.90111
Target:  5'- ---cCACCCACGCCgccuCGGCCCGCg--- -3'
miRNA:   3'- aauuGUGGGUGUGG----GUUGGGUGacac -5'
5540 5' -53.5 NC_001806.1 + 78927 0.68 0.907562
Target:  5'- -cGGC-CCCuCGCCCGggGCCCGCcGUGu -3'
miRNA:   3'- aaUUGuGGGuGUGGGU--UGGGUGaCAC- -5'
5540 5' -53.5 NC_001806.1 + 113544 0.68 0.907562
Target:  5'- --uGCGCCCugGCCCGGCUCG-UGg- -3'
miRNA:   3'- aauUGUGGGugUGGGUUGGGUgACac -5'
5540 5' -53.5 NC_001806.1 + 29775 0.67 0.913763
Target:  5'- -gGACGcCCCGCGCCCc-CCCACg--- -3'
miRNA:   3'- aaUUGU-GGGUGUGGGuuGGGUGacac -5'
5540 5' -53.5 NC_001806.1 + 113138 0.67 0.919127
Target:  5'- -gAACGCCUgggggcaGCGCCUGGCCCACgGg- -3'
miRNA:   3'- aaUUGUGGG-------UGUGGGUUGGGUGaCac -5'
5540 5' -53.5 NC_001806.1 + 43387 0.67 0.91971
Target:  5'- -cGACACCCgACGCCUcgugaaGGCCCGCg--- -3'
miRNA:   3'- aaUUGUGGG-UGUGGG------UUGGGUGacac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.