miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5540 5' -53.5 NC_001806.1 + 46123 0.66 0.95817
Target:  5'- -gGGCGCCUcCGCC--ACCCGCUGg- -3'
miRNA:   3'- aaUUGUGGGuGUGGguUGGGUGACac -5'
5540 5' -53.5 NC_001806.1 + 26646 0.66 0.95817
Target:  5'- -cGGCGCCagAgGCCCGGCCCACc--- -3'
miRNA:   3'- aaUUGUGGg-UgUGGGUUGGGUGacac -5'
5540 5' -53.5 NC_001806.1 + 52157 0.66 0.95817
Target:  5'- ---cCACCUgacGCGCCUAGCCaacCUGUGg -3'
miRNA:   3'- aauuGUGGG---UGUGGGUUGGgu-GACAC- -5'
5540 5' -53.5 NC_001806.1 + 24731 0.66 0.957015
Target:  5'- --uGCGCCCGCGCCCugcuggagcccgacGAcgacgccccCCCGCUGg- -3'
miRNA:   3'- aauUGUGGGUGUGGG--------------UU---------GGGUGACac -5'
5540 5' -53.5 NC_001806.1 + 67862 0.66 0.954234
Target:  5'- --cGCACCCACGCCguccgggcuGCCCGCa--- -3'
miRNA:   3'- aauUGUGGGUGUGGgu-------UGGGUGacac -5'
5540 5' -53.5 NC_001806.1 + 65589 0.66 0.954234
Target:  5'- -aAGCACCauCACGCCauuGACUCGCUGg- -3'
miRNA:   3'- aaUUGUGG--GUGUGGg--UUGGGUGACac -5'
5540 5' -53.5 NC_001806.1 + 53034 0.68 0.90111
Target:  5'- ---cCACCCACGCCgccuCGGCCCGCg--- -3'
miRNA:   3'- aauuGUGGGUGUGG----GUUGGGUGacac -5'
5540 5' -53.5 NC_001806.1 + 145447 0.66 0.945629
Target:  5'- gUAACccCCCACGCCaauGACCCACg--- -3'
miRNA:   3'- aAUUGu-GGGUGUGGg--UUGGGUGacac -5'
5540 5' -53.5 NC_001806.1 + 35727 0.66 0.945629
Target:  5'- ---cCACCCcccaACCUAugCCACUGUc -3'
miRNA:   3'- aauuGUGGGug--UGGGUugGGUGACAc -5'
5540 5' -53.5 NC_001806.1 + 23817 0.66 0.945629
Target:  5'- uUUGGCcCCCugcGCGCCUcgGGCCCGCUGc- -3'
miRNA:   3'- -AAUUGuGGG---UGUGGG--UUGGGUGACac -5'
5540 5' -53.5 NC_001806.1 + 14777 0.66 0.940952
Target:  5'- --cGC-CCCAUACCCuACCCGCg--- -3'
miRNA:   3'- aauUGuGGGUGUGGGuUGGGUGacac -5'
5540 5' -53.5 NC_001806.1 + 130146 0.66 0.940471
Target:  5'- -aGugGCCCGCGcaguucuCCCAggucacaaACCUGCUGUGu -3'
miRNA:   3'- aaUugUGGGUGU-------GGGU--------UGGGUGACAC- -5'
5540 5' -53.5 NC_001806.1 + 27313 0.67 0.936024
Target:  5'- -cAGCGUCCGCcgagucuucgggGCCCGGCCCAUUGg- -3'
miRNA:   3'- aaUUGUGGGUG------------UGGGUUGGGUGACac -5'
5540 5' -53.5 NC_001806.1 + 144310 0.67 0.936024
Target:  5'- -cGACACCCcCcCCCcGCCCG-UGUGg -3'
miRNA:   3'- aaUUGUGGGuGuGGGuUGGGUgACAC- -5'
5540 5' -53.5 NC_001806.1 + 77440 0.71 0.728054
Target:  5'- -aGACGCCCGCGCCCGGgcguccgcCCCACc--- -3'
miRNA:   3'- aaUUGUGGGUGUGGGUU--------GGGUGacac -5'
5540 5' -53.5 NC_001806.1 + 143908 0.7 0.814848
Target:  5'- ---cCACCCAC-CCCAcgccCCCACUGa- -3'
miRNA:   3'- aauuGUGGGUGuGGGUu---GGGUGACac -5'
5540 5' -53.5 NC_001806.1 + 34700 0.7 0.814848
Target:  5'- ---cCGCCCACAucccccCCCAACCCGCa--- -3'
miRNA:   3'- aauuGUGGGUGU------GGGUUGGGUGacac -5'
5540 5' -53.5 NC_001806.1 + 24002 0.7 0.814848
Target:  5'- cUGGCgGCCCugG-CCAACCgGCUGUGc -3'
miRNA:   3'- aAUUG-UGGGugUgGGUUGGgUGACAC- -5'
5540 5' -53.5 NC_001806.1 + 48750 0.7 0.805785
Target:  5'- -aGACGggaCCGCGCaaCCAACCCACUGg- -3'
miRNA:   3'- aaUUGUg--GGUGUG--GGUUGGGUGACac -5'
5540 5' -53.5 NC_001806.1 + 118623 0.7 0.805785
Target:  5'- --cACACCCACACCCAcCCC-Cg--- -3'
miRNA:   3'- aauUGUGGGUGUGGGUuGGGuGacac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.