miRNA display CGI


Results 41 - 60 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5540 5' -53.5 NC_001806.1 + 9692 0.7 0.796555
Target:  5'- --cACGCCCACACCgaCAACCC-CaGUGc -3'
miRNA:   3'- aauUGUGGGUGUGG--GUUGGGuGaCAC- -5'
5540 5' -53.5 NC_001806.1 + 109375 0.71 0.758145
Target:  5'- cUUGGCGCCCGCGCCCcccGACCC-Cg--- -3'
miRNA:   3'- -AAUUGUGGGUGUGGG---UUGGGuGacac -5'
5540 5' -53.5 NC_001806.1 + 149762 0.71 0.728054
Target:  5'- aUGGCGCCCcagacaugGCGCCCGGCCCcucaccucgcGCUGg- -3'
miRNA:   3'- aAUUGUGGG--------UGUGGGUUGGG----------UGACac -5'
5540 5' -53.5 NC_001806.1 + 78178 0.7 0.823733
Target:  5'- cUGAC-CCCGCAUCCAgacGCCCGCa--- -3'
miRNA:   3'- aAUUGuGGGUGUGGGU---UGGGUGacac -5'
5540 5' -53.5 NC_001806.1 + 23384 0.72 0.697168
Target:  5'- -gGACGCCCGCGCCCcccucCCCGCg--- -3'
miRNA:   3'- aaUUGUGGGUGUGGGuu---GGGUGacac -5'
5540 5' -53.5 NC_001806.1 + 7595 0.72 0.697168
Target:  5'- ---cCGCCCACcggaaGCCCAACCCACa--- -3'
miRNA:   3'- aauuGUGGGUG-----UGGGUUGGGUGacac -5'
5540 5' -53.5 NC_001806.1 + 89748 0.73 0.665756
Target:  5'- aUAGCGgCCACGCCC-ACCgGCUGaUGa -3'
miRNA:   3'- aAUUGUgGGUGUGGGuUGGgUGAC-AC- -5'
5540 5' -53.5 NC_001806.1 + 23443 0.73 0.665756
Target:  5'- ---cCGCCCcCGCCCAGCCCGCg--- -3'
miRNA:   3'- aauuGUGGGuGUGGGUUGGGUGacac -5'
5540 5' -53.5 NC_001806.1 + 113974 0.73 0.634083
Target:  5'- -cAACACCCAgGCCCGAgCCGCg--- -3'
miRNA:   3'- aaUUGUGGGUgUGGGUUgGGUGacac -5'
5540 5' -53.5 NC_001806.1 + 125573 0.74 0.612944
Target:  5'- -gGGCACCCACGCCCGcgACCCGg---- -3'
miRNA:   3'- aaUUGUGGGUGUGGGU--UGGGUgacac -5'
5540 5' -53.5 NC_001806.1 + 49007 0.75 0.529615
Target:  5'- -cGGCACCUAC-CCCGGCCUccauccgcGCUGUGg -3'
miRNA:   3'- aaUUGUGGGUGuGGGUUGGG--------UGACAC- -5'
5540 5' -53.5 NC_001806.1 + 107396 0.69 0.86051
Target:  5'- --cGCGCCCGCcggagccuucugauaGCCuCGGCCCugUGUa -3'
miRNA:   3'- aauUGUGGGUG---------------UGG-GUUGGGugACAc -5'
5540 5' -53.5 NC_001806.1 + 93344 0.68 0.89441
Target:  5'- -gGGC-CCCGCACCCAGCa-GCUGc- -3'
miRNA:   3'- aaUUGuGGGUGUGGGUUGggUGACac -5'
5540 5' -53.5 NC_001806.1 + 16818 0.68 0.887465
Target:  5'- aUGACACagGCGCUCGGCCuCGCUGg- -3'
miRNA:   3'- aAUUGUGggUGUGGGUUGG-GUGACac -5'
5540 5' -53.5 NC_001806.1 + 23584 0.68 0.887465
Target:  5'- -cGGCGCCCGCGgCCGccgcccuggagGCCUACUGc- -3'
miRNA:   3'- aaUUGUGGGUGUgGGU-----------UGGGUGACac -5'
5540 5' -53.5 NC_001806.1 + 85715 0.68 0.88028
Target:  5'- gUAGCGCCgGCACCCAccGCCCcgaaccCUGc- -3'
miRNA:   3'- aAUUGUGGgUGUGGGU--UGGGu-----GACac -5'
5540 5' -53.5 NC_001806.1 + 67000 0.68 0.88028
Target:  5'- --cGCGCCCcCACCCGcguCCCGCgGUa -3'
miRNA:   3'- aauUGUGGGuGUGGGUu--GGGUGaCAc -5'
5540 5' -53.5 NC_001806.1 + 26462 0.68 0.879549
Target:  5'- gUAACcUCCACGCCCAacucggaACCCGCgGUc -3'
miRNA:   3'- aAUUGuGGGUGUGGGU-------UGGGUGaCAc -5'
5540 5' -53.5 NC_001806.1 + 143955 0.68 0.872859
Target:  5'- ---cCGCCCACGCCCccGCCC-CUGc- -3'
miRNA:   3'- aauuGUGGGUGUGGGu-UGGGuGACac -5'
5540 5' -53.5 NC_001806.1 + 77397 0.69 0.865208
Target:  5'- -cGGCGgCCGCGCCCGcGCCCcuGCUcGUGg -3'
miRNA:   3'- aaUUGUgGGUGUGGGU-UGGG--UGA-CAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.