Results 61 - 68 of 68 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 5540 | 5' | -53.5 | NC_001806.1 | + | 146114 | 1.07 | 0.005678 |
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Target: 5'- cUUAACACCCACACCCAACCCACUGUGg -3' miRNA: 3'- -AAUUGUGGGUGUGGGUUGGGUGACAC- -5' |
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| 5540 | 5' | -53.5 | NC_001806.1 | + | 107851 | 0.69 | 0.857333 |
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Target: 5'- -cGACGCCCACuguuCCUAACCUACc--- -3' miRNA: 3'- aaUUGUGGGUGu---GGGUUGGGUGacac -5' |
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| 5540 | 5' | -53.5 | NC_001806.1 | + | 47222 | 0.69 | 0.857333 |
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Target: 5'- -aAACACCCcgGCgGCCCc-CCCGCUGUa -3' miRNA: 3'- aaUUGUGGG--UG-UGGGuuGGGUGACAc -5' |
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| 5540 | 5' | -53.5 | NC_001806.1 | + | 111939 | 0.69 | 0.849241 |
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Target: 5'- -cGACgGCCCGCACCCcaucgagcAACCCACa--- -3' miRNA: 3'- aaUUG-UGGGUGUGGG--------UUGGGUGacac -5' |
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| 5540 | 5' | -53.5 | NC_001806.1 | + | 45488 | 0.69 | 0.849241 |
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Target: 5'- -gGGCACgCCugAaCCC-GCCCugUGUGg -3' miRNA: 3'- aaUUGUG-GGugU-GGGuUGGGugACAC- -5' |
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| 5540 | 5' | -53.5 | NC_001806.1 | + | 118580 | 0.69 | 0.832433 |
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Target: 5'- ----aACCCACGCCCuuCCCGCg--- -3' miRNA: 3'- aauugUGGGUGUGGGuuGGGUGacac -5' |
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| 5540 | 5' | -53.5 | NC_001806.1 | + | 114204 | 0.69 | 0.832433 |
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Target: 5'- --cGCACCCccuGCACCCGGCCaauCUgGUGg -3' miRNA: 3'- aauUGUGGG---UGUGGGUUGGgu-GA-CAC- -5' |
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| 5540 | 5' | -53.5 | NC_001806.1 | + | 95850 | 0.7 | 0.823733 |
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Target: 5'- ---cCACCCACagcuucGCCCAGCCCcccaacaccgcGCUGUa -3' miRNA: 3'- aauuGUGGGUG------UGGGUUGGG-----------UGACAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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