Results 61 - 68 of 68 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 5540 | 5' | -53.5 | NC_001806.1 | + | 65589 | 0.66 | 0.954234 |
|
Target: 5'- -aAGCACCauCACGCCauuGACUCGCUGg- -3' miRNA: 3'- aaUUGUGG--GUGUGGg--UUGGGUGACac -5' |
|||||||
| 5540 | 5' | -53.5 | NC_001806.1 | + | 67862 | 0.66 | 0.954234 |
|
Target: 5'- --cGCACCCACGCCguccgggcuGCCCGCa--- -3' miRNA: 3'- aauUGUGGGUGUGGgu-------UGGGUGacac -5' |
|||||||
| 5540 | 5' | -53.5 | NC_001806.1 | + | 24731 | 0.66 | 0.957015 |
|
Target: 5'- --uGCGCCCGCGCCCugcuggagcccgacGAcgacgccccCCCGCUGg- -3' miRNA: 3'- aauUGUGGGUGUGGG--------------UU---------GGGUGACac -5' |
|||||||
| 5540 | 5' | -53.5 | NC_001806.1 | + | 52157 | 0.66 | 0.95817 |
|
Target: 5'- ---cCACCUgacGCGCCUAGCCaacCUGUGg -3' miRNA: 3'- aauuGUGGG---UGUGGGUUGGgu-GACAC- -5' |
|||||||
| 5540 | 5' | -53.5 | NC_001806.1 | + | 26646 | 0.66 | 0.95817 |
|
Target: 5'- -cGGCGCCagAgGCCCGGCCCACc--- -3' miRNA: 3'- aaUUGUGGg-UgUGGGUUGGGUGacac -5' |
|||||||
| 5540 | 5' | -53.5 | NC_001806.1 | + | 46123 | 0.66 | 0.95817 |
|
Target: 5'- -gGGCGCCUcCGCC--ACCCGCUGg- -3' miRNA: 3'- aaUUGUGGGuGUGGguUGGGUGACac -5' |
|||||||
| 5540 | 5' | -53.5 | NC_001806.1 | + | 101140 | 0.66 | 0.95817 |
|
Target: 5'- -cAGCACCCGC-CCCAcCUCGCa--- -3' miRNA: 3'- aaUUGUGGGUGuGGGUuGGGUGacac -5' |
|||||||
| 5540 | 5' | -53.5 | NC_001806.1 | + | 135785 | 0.65 | 0.960783 |
|
Target: 5'- -cGGCGCCCGCccccccugguccugGCCCGcagACCCgcgGCUGUu -3' miRNA: 3'- aaUUGUGGGUG--------------UGGGU---UGGG---UGACAc -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home