miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5540 5' -53.5 NC_001806.1 + 89748 0.73 0.665756
Target:  5'- aUAGCGgCCACGCCC-ACCgGCUGaUGa -3'
miRNA:   3'- aAUUGUgGGUGUGGGuUGGgUGAC-AC- -5'
5540 5' -53.5 NC_001806.1 + 91350 0.67 0.91971
Target:  5'- -cGGgACCCACguggcGgCCAACCCACagGUGg -3'
miRNA:   3'- aaUUgUGGGUG-----UgGGUUGGGUGa-CAC- -5'
5540 5' -53.5 NC_001806.1 + 93344 0.68 0.89441
Target:  5'- -gGGC-CCCGCACCCAGCa-GCUGc- -3'
miRNA:   3'- aaUUGuGGGUGUGGGUUGggUGACac -5'
5540 5' -53.5 NC_001806.1 + 95850 0.7 0.823733
Target:  5'- ---cCACCCACagcuucGCCCAGCCCcccaacaccgcGCUGUa -3'
miRNA:   3'- aauuGUGGGUG------UGGGUUGGG-----------UGACAc -5'
5540 5' -53.5 NC_001806.1 + 101140 0.66 0.95817
Target:  5'- -cAGCACCCGC-CCCAcCUCGCa--- -3'
miRNA:   3'- aaUUGUGGGUGuGGGUuGGGUGacac -5'
5540 5' -53.5 NC_001806.1 + 107396 0.69 0.86051
Target:  5'- --cGCGCCCGCcggagccuucugauaGCCuCGGCCCugUGUa -3'
miRNA:   3'- aauUGUGGGUG---------------UGG-GUUGGGugACAc -5'
5540 5' -53.5 NC_001806.1 + 107851 0.69 0.857333
Target:  5'- -cGACGCCCACuguuCCUAACCUACc--- -3'
miRNA:   3'- aaUUGUGGGUGu---GGGUUGGGUGacac -5'
5540 5' -53.5 NC_001806.1 + 109375 0.71 0.758145
Target:  5'- cUUGGCGCCCGCGCCCcccGACCC-Cg--- -3'
miRNA:   3'- -AAUUGUGGGUGUGGG---UUGGGuGacac -5'
5540 5' -53.5 NC_001806.1 + 111939 0.69 0.849241
Target:  5'- -cGACgGCCCGCACCCcaucgagcAACCCACa--- -3'
miRNA:   3'- aaUUG-UGGGUGUGGG--------UUGGGUGacac -5'
5540 5' -53.5 NC_001806.1 + 113138 0.67 0.919127
Target:  5'- -gAACGCCUgggggcaGCGCCUGGCCCACgGg- -3'
miRNA:   3'- aaUUGUGGG-------UGUGGGUUGGGUGaCac -5'
5540 5' -53.5 NC_001806.1 + 113544 0.68 0.907562
Target:  5'- --uGCGCCCugGCCCGGCUCG-UGg- -3'
miRNA:   3'- aauUGUGGGugUGGGUUGGGUgACac -5'
5540 5' -53.5 NC_001806.1 + 113974 0.73 0.634083
Target:  5'- -cAACACCCAgGCCCGAgCCGCg--- -3'
miRNA:   3'- aaUUGUGGGUgUGGGUUgGGUGacac -5'
5540 5' -53.5 NC_001806.1 + 114204 0.69 0.832433
Target:  5'- --cGCACCCccuGCACCCGGCCaauCUgGUGg -3'
miRNA:   3'- aauUGUGGG---UGUGGGUUGGgu-GA-CAC- -5'
5540 5' -53.5 NC_001806.1 + 118580 0.69 0.832433
Target:  5'- ----aACCCACGCCCuuCCCGCg--- -3'
miRNA:   3'- aauugUGGGUGUGGGuuGGGUGacac -5'
5540 5' -53.5 NC_001806.1 + 118623 0.7 0.805785
Target:  5'- --cACACCCACACCCAcCCC-Cg--- -3'
miRNA:   3'- aauUGUGGGUGUGGGUuGGGuGacac -5'
5540 5' -53.5 NC_001806.1 + 119295 0.67 0.91971
Target:  5'- -gGGCGCCCGCagACCC-GCCCAUcGUc -3'
miRNA:   3'- aaUUGUGGGUG--UGGGuUGGGUGaCAc -5'
5540 5' -53.5 NC_001806.1 + 121594 0.67 0.925403
Target:  5'- --cGC-CCCACAUcgauuccgCCAACgCACUGUGg -3'
miRNA:   3'- aauUGuGGGUGUG--------GGUUGgGUGACAC- -5'
5540 5' -53.5 NC_001806.1 + 125573 0.74 0.612944
Target:  5'- -gGGCACCCACGCCCGcgACCCGg---- -3'
miRNA:   3'- aaUUGUGGGUGUGGGU--UGGGUgacac -5'
5540 5' -53.5 NC_001806.1 + 130146 0.66 0.940471
Target:  5'- -aGugGCCCGCGcaguucuCCCAggucacaaACCUGCUGUGu -3'
miRNA:   3'- aaUugUGGGUGU-------GGGU--------UGGGUGACAC- -5'
5540 5' -53.5 NC_001806.1 + 135785 0.65 0.960783
Target:  5'- -cGGCGCCCGCccccccugguccugGCCCGcagACCCgcgGCUGUu -3'
miRNA:   3'- aaUUGUGGGUG--------------UGGGU---UGGG---UGACAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.