miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5540 5' -53.5 NC_001806.1 + 109375 0.71 0.758145
Target:  5'- cUUGGCGCCCGCGCCCcccGACCC-Cg--- -3'
miRNA:   3'- -AAUUGUGGGUGUGGG---UUGGGuGacac -5'
5540 5' -53.5 NC_001806.1 + 107851 0.69 0.857333
Target:  5'- -cGACGCCCACuguuCCUAACCUACc--- -3'
miRNA:   3'- aaUUGUGGGUGu---GGGUUGGGUGacac -5'
5540 5' -53.5 NC_001806.1 + 107396 0.69 0.86051
Target:  5'- --cGCGCCCGCcggagccuucugauaGCCuCGGCCCugUGUa -3'
miRNA:   3'- aauUGUGGGUG---------------UGG-GUUGGGugACAc -5'
5540 5' -53.5 NC_001806.1 + 101140 0.66 0.95817
Target:  5'- -cAGCACCCGC-CCCAcCUCGCa--- -3'
miRNA:   3'- aaUUGUGGGUGuGGGUuGGGUGacac -5'
5540 5' -53.5 NC_001806.1 + 95850 0.7 0.823733
Target:  5'- ---cCACCCACagcuucGCCCAGCCCcccaacaccgcGCUGUa -3'
miRNA:   3'- aauuGUGGGUG------UGGGUUGGG-----------UGACAc -5'
5540 5' -53.5 NC_001806.1 + 93344 0.68 0.89441
Target:  5'- -gGGC-CCCGCACCCAGCa-GCUGc- -3'
miRNA:   3'- aaUUGuGGGUGUGGGUUGggUGACac -5'
5540 5' -53.5 NC_001806.1 + 91350 0.67 0.91971
Target:  5'- -cGGgACCCACguggcGgCCAACCCACagGUGg -3'
miRNA:   3'- aaUUgUGGGUG-----UgGGUUGGGUGa-CAC- -5'
5540 5' -53.5 NC_001806.1 + 89748 0.73 0.665756
Target:  5'- aUAGCGgCCACGCCC-ACCgGCUGaUGa -3'
miRNA:   3'- aAUUGUgGGUGUGGGuUGGgUGAC-AC- -5'
5540 5' -53.5 NC_001806.1 + 85715 0.68 0.88028
Target:  5'- gUAGCGCCgGCACCCAccGCCCcgaaccCUGc- -3'
miRNA:   3'- aAUUGUGGgUGUGGGU--UGGGu-----GACac -5'
5540 5' -53.5 NC_001806.1 + 78927 0.68 0.907562
Target:  5'- -cGGC-CCCuCGCCCGggGCCCGCcGUGu -3'
miRNA:   3'- aaUUGuGGGuGUGGGU--UGGGUGaCAC- -5'
5540 5' -53.5 NC_001806.1 + 78178 0.7 0.823733
Target:  5'- cUGAC-CCCGCAUCCAgacGCCCGCa--- -3'
miRNA:   3'- aAUUGuGGGUGUGGGU---UGGGUGacac -5'
5540 5' -53.5 NC_001806.1 + 77440 0.71 0.728054
Target:  5'- -aGACGCCCGCGCCCGGgcguccgcCCCACc--- -3'
miRNA:   3'- aaUUGUGGGUGUGGGUU--------GGGUGacac -5'
5540 5' -53.5 NC_001806.1 + 77397 0.69 0.865208
Target:  5'- -cGGCGgCCGCGCCCGcGCCCcuGCUcGUGg -3'
miRNA:   3'- aaUUGUgGGUGUGGGU-UGGG--UGA-CAC- -5'
5540 5' -53.5 NC_001806.1 + 72216 0.67 0.930841
Target:  5'- -cGACACCgCAUACCUuuuuGACCCGCa--- -3'
miRNA:   3'- aaUUGUGG-GUGUGGG----UUGGGUGacac -5'
5540 5' -53.5 NC_001806.1 + 67862 0.66 0.954234
Target:  5'- --cGCACCCACGCCguccgggcuGCCCGCa--- -3'
miRNA:   3'- aauUGUGGGUGUGGgu-------UGGGUGacac -5'
5540 5' -53.5 NC_001806.1 + 67000 0.68 0.88028
Target:  5'- --cGCGCCCcCACCCGcguCCCGCgGUa -3'
miRNA:   3'- aauUGUGGGuGUGGGUu--GGGUGaCAc -5'
5540 5' -53.5 NC_001806.1 + 65589 0.66 0.954234
Target:  5'- -aAGCACCauCACGCCauuGACUCGCUGg- -3'
miRNA:   3'- aaUUGUGG--GUGUGGg--UUGGGUGACac -5'
5540 5' -53.5 NC_001806.1 + 62646 0.67 0.936024
Target:  5'- -gAGCGCCUGCGCCaCGGaCCACUGc- -3'
miRNA:   3'- aaUUGUGGGUGUGG-GUUgGGUGACac -5'
5540 5' -53.5 NC_001806.1 + 53034 0.68 0.90111
Target:  5'- ---cCACCCACGCCgccuCGGCCCGCg--- -3'
miRNA:   3'- aauuGUGGGUGUGG----GUUGGGUGacac -5'
5540 5' -53.5 NC_001806.1 + 52157 0.66 0.95817
Target:  5'- ---cCACCUgacGCGCCUAGCCaacCUGUGg -3'
miRNA:   3'- aauuGUGGG---UGUGGGUUGGgu-GACAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.