miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5540 5' -53.5 NC_001806.1 + 135785 0.65 0.960783
Target:  5'- -cGGCGCCCGCccccccugguccugGCCCGcagACCCgcgGCUGUu -3'
miRNA:   3'- aaUUGUGGGUG--------------UGGGU---UGGG---UGACAc -5'
5540 5' -53.5 NC_001806.1 + 118623 0.7 0.805785
Target:  5'- --cACACCCACACCCAcCCC-Cg--- -3'
miRNA:   3'- aauUGUGGGUGUGGGUuGGGuGacac -5'
5540 5' -53.5 NC_001806.1 + 48750 0.7 0.805785
Target:  5'- -aGACGggaCCGCGCaaCCAACCCACUGg- -3'
miRNA:   3'- aaUUGUg--GGUGUG--GGUUGGGUGACac -5'
5540 5' -53.5 NC_001806.1 + 24002 0.7 0.814848
Target:  5'- cUGGCgGCCCugG-CCAACCgGCUGUGc -3'
miRNA:   3'- aAUUG-UGGGugUgGGUUGGgUGACAC- -5'
5540 5' -53.5 NC_001806.1 + 34700 0.7 0.814848
Target:  5'- ---cCGCCCACAucccccCCCAACCCGCa--- -3'
miRNA:   3'- aauuGUGGGUGU------GGGUUGGGUGacac -5'
5540 5' -53.5 NC_001806.1 + 143908 0.7 0.814848
Target:  5'- ---cCACCCAC-CCCAcgccCCCACUGa- -3'
miRNA:   3'- aauuGUGGGUGuGGGUu---GGGUGACac -5'
5540 5' -53.5 NC_001806.1 + 78178 0.7 0.823733
Target:  5'- cUGAC-CCCGCAUCCAgacGCCCGCa--- -3'
miRNA:   3'- aAUUGuGGGUGUGGGU---UGGGUGacac -5'
5540 5' -53.5 NC_001806.1 + 95850 0.7 0.823733
Target:  5'- ---cCACCCACagcuucGCCCAGCCCcccaacaccgcGCUGUa -3'
miRNA:   3'- aauuGUGGGUG------UGGGUUGGG-----------UGACAc -5'
5540 5' -53.5 NC_001806.1 + 114204 0.69 0.832433
Target:  5'- --cGCACCCccuGCACCCGGCCaauCUgGUGg -3'
miRNA:   3'- aauUGUGGG---UGUGGGUUGGgu-GA-CAC- -5'
5540 5' -53.5 NC_001806.1 + 9692 0.7 0.796555
Target:  5'- --cACGCCCACACCgaCAACCC-CaGUGc -3'
miRNA:   3'- aauUGUGGGUGUGG--GUUGGGuGaCAC- -5'
5540 5' -53.5 NC_001806.1 + 109375 0.71 0.758145
Target:  5'- cUUGGCGCCCGCGCCCcccGACCC-Cg--- -3'
miRNA:   3'- -AAUUGUGGGUGUGGG---UUGGGuGacac -5'
5540 5' -53.5 NC_001806.1 + 149762 0.71 0.728054
Target:  5'- aUGGCGCCCcagacaugGCGCCCGGCCCcucaccucgcGCUGg- -3'
miRNA:   3'- aAUUGUGGG--------UGUGGGUUGGG----------UGACac -5'
5540 5' -53.5 NC_001806.1 + 49007 0.75 0.529615
Target:  5'- -cGGCACCUAC-CCCGGCCUccauccgcGCUGUGg -3'
miRNA:   3'- aaUUGUGGGUGuGGGUUGGG--------UGACAC- -5'
5540 5' -53.5 NC_001806.1 + 125573 0.74 0.612944
Target:  5'- -gGGCACCCACGCCCGcgACCCGg---- -3'
miRNA:   3'- aaUUGUGGGUGUGGGU--UGGGUgacac -5'
5540 5' -53.5 NC_001806.1 + 113974 0.73 0.634083
Target:  5'- -cAACACCCAgGCCCGAgCCGCg--- -3'
miRNA:   3'- aaUUGUGGGUgUGGGUUgGGUGacac -5'
5540 5' -53.5 NC_001806.1 + 23443 0.73 0.665756
Target:  5'- ---cCGCCCcCGCCCAGCCCGCg--- -3'
miRNA:   3'- aauuGUGGGuGUGGGUUGGGUGacac -5'
5540 5' -53.5 NC_001806.1 + 89748 0.73 0.665756
Target:  5'- aUAGCGgCCACGCCC-ACCgGCUGaUGa -3'
miRNA:   3'- aAUUGUgGGUGUGGGuUGGgUGAC-AC- -5'
5540 5' -53.5 NC_001806.1 + 7595 0.72 0.697168
Target:  5'- ---cCGCCCACcggaaGCCCAACCCACa--- -3'
miRNA:   3'- aauuGUGGGUG-----UGGGUUGGGUGacac -5'
5540 5' -53.5 NC_001806.1 + 23384 0.72 0.697168
Target:  5'- -gGACGCCCGCGCCCcccucCCCGCg--- -3'
miRNA:   3'- aaUUGUGGGUGUGGGuu---GGGUGacac -5'
5540 5' -53.5 NC_001806.1 + 77440 0.71 0.728054
Target:  5'- -aGACGCCCGCGCCCGGgcguccgcCCCACc--- -3'
miRNA:   3'- aaUUGUGGGUGUGGGUU--------GGGUGacac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.