miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5541 5' -51.7 NC_001806.1 + 145382 1.13 0.004586
Target:  5'- aCCACCAACUGCCCCCUUAUCUAAGGGc -3'
miRNA:   3'- -GGUGGUUGACGGGGGAAUAGAUUCCC- -5'
5541 5' -51.7 NC_001806.1 + 28625 0.75 0.692708
Target:  5'- cCCACUGACUcauacgcagGCCCCCcUUAcucacacgcaUCUAGGGGg -3'
miRNA:   3'- -GGUGGUUGA---------CGGGGG-AAU----------AGAUUCCC- -5'
5541 5' -51.7 NC_001806.1 + 119200 0.73 0.813461
Target:  5'- cCCGCCGgccgcgaaggaggcuGCgGCCCaCCUguccauggGUCUGGGGGa -3'
miRNA:   3'- -GGUGGU---------------UGaCGGG-GGAa-------UAGAUUCCC- -5'
5541 5' -51.7 NC_001806.1 + 148505 0.73 0.822285
Target:  5'- cCCGCCcuGACgGCCUCCUcggccuccaugcggGUCUGGGGGu -3'
miRNA:   3'- -GGUGG--UUGaCGGGGGAa-------------UAGAUUCCC- -5'
5541 5' -51.7 NC_001806.1 + 38117 0.71 0.868133
Target:  5'- gCCACC--UUGCCCCCgug-CUGcucGGGGg -3'
miRNA:   3'- -GGUGGuuGACGGGGGaauaGAU---UCCC- -5'
5541 5' -51.7 NC_001806.1 + 119957 0.71 0.896704
Target:  5'- cCCACCAGCUGUCuCCCg---CUGGGcaGGc -3'
miRNA:   3'- -GGUGGUUGACGG-GGGaauaGAUUC--CC- -5'
5541 5' -51.7 NC_001806.1 + 148427 0.7 0.909561
Target:  5'- cUCACCGugUGCCCCCccaggGUCagguaccgcGGGGc -3'
miRNA:   3'- -GGUGGUugACGGGGGaa---UAGau-------UCCC- -5'
5541 5' -51.7 NC_001806.1 + 120798 0.7 0.91562
Target:  5'- gCGCCGuugGCCCCCgccUCUGGGGu -3'
miRNA:   3'- gGUGGUugaCGGGGGaauAGAUUCCc -5'
5541 5' -51.7 NC_001806.1 + 65457 0.7 0.921431
Target:  5'- -uGCC-GCgGCCCCCggGUcCUGGGGGc -3'
miRNA:   3'- ggUGGuUGaCGGGGGaaUA-GAUUCCC- -5'
5541 5' -51.7 NC_001806.1 + 109212 0.7 0.921431
Target:  5'- cCCACC-ACaGCUCCCUUAgcguGGGGc -3'
miRNA:   3'- -GGUGGuUGaCGGGGGAAUagauUCCC- -5'
5541 5' -51.7 NC_001806.1 + 144946 0.69 0.937365
Target:  5'- aCCGCCAACggccgGCCCCCguggCggcccggcccGGGGc -3'
miRNA:   3'- -GGUGGUUGa----CGGGGGaauaGau--------UCCC- -5'
5541 5' -51.7 NC_001806.1 + 22903 0.69 0.942178
Target:  5'- cCCGCCAGC--CCCCCgcggCcgGAGGGa -3'
miRNA:   3'- -GGUGGUUGacGGGGGaauaGa-UUCCC- -5'
5541 5' -51.7 NC_001806.1 + 83224 0.69 0.946744
Target:  5'- gCCGCCGACguggucaccGCCCCC---UC-AAGGGc -3'
miRNA:   3'- -GGUGGUUGa--------CGGGGGaauAGaUUCCC- -5'
5541 5' -51.7 NC_001806.1 + 27706 0.68 0.95899
Target:  5'- gCACCGACgcaggccaaGCCCCUguugcGUCggcggGAGGGg -3'
miRNA:   3'- gGUGGUUGa--------CGGGGGaa---UAGa----UUCCC- -5'
5541 5' -51.7 NC_001806.1 + 24061 0.68 0.969147
Target:  5'- -gACCGGC-GCCCCCgacgUGUCggcgcuGGGc -3'
miRNA:   3'- ggUGGUUGaCGGGGGa---AUAGauu---CCC- -5'
5541 5' -51.7 NC_001806.1 + 31180 0.68 0.969147
Target:  5'- aC-CCGACgGCCCCCgcGUCgGAGuGGa -3'
miRNA:   3'- gGuGGUUGaCGGGGGaaUAGaUUC-CC- -5'
5541 5' -51.7 NC_001806.1 + 33333 0.68 0.970941
Target:  5'- gUCGCCGAC-GCCCCUUggccgccccggCUGcAGGGg -3'
miRNA:   3'- -GGUGGUUGaCGGGGGAaua--------GAU-UCCC- -5'
5541 5' -51.7 NC_001806.1 + 28149 0.67 0.974832
Target:  5'- cCCGCCGGCcugagggccGCCCCCagcgcgAggUGAGGGg -3'
miRNA:   3'- -GGUGGUUGa--------CGGGGGaa----UagAUUCCC- -5'
5541 5' -51.7 NC_001806.1 + 39817 0.67 0.974832
Target:  5'- gCGCCA---GCCCCCg---UUGGGGGg -3'
miRNA:   3'- gGUGGUugaCGGGGGaauaGAUUCCC- -5'
5541 5' -51.7 NC_001806.1 + 56254 0.67 0.974832
Target:  5'- gCCGCCAACcggGCCCC---GUCcccGGGGu -3'
miRNA:   3'- -GGUGGUUGa--CGGGGgaaUAGau-UCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.