Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5541 | 5' | -51.7 | NC_001806.1 | + | 112997 | 0.66 | 0.985666 |
Target: 5'- -gACCGugUGCCaCCCUUcgCUGAu-- -3' miRNA: 3'- ggUGGUugACGG-GGGAAuaGAUUccc -5' |
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5541 | 5' | -51.7 | NC_001806.1 | + | 28149 | 0.67 | 0.974832 |
Target: 5'- cCCGCCGGCcugagggccGCCCCCagcgcgAggUGAGGGg -3' miRNA: 3'- -GGUGGUUGa--------CGGGGGaa----UagAUUCCC- -5' |
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5541 | 5' | -51.7 | NC_001806.1 | + | 39817 | 0.67 | 0.974832 |
Target: 5'- gCGCCA---GCCCCCg---UUGGGGGg -3' miRNA: 3'- gGUGGUugaCGGGGGaauaGAUUCCC- -5' |
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5541 | 5' | -51.7 | NC_001806.1 | + | 56254 | 0.67 | 0.974832 |
Target: 5'- gCCGCCAACcggGCCCC---GUCcccGGGGu -3' miRNA: 3'- -GGUGGUUGa--CGGGGgaaUAGau-UCCC- -5' |
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5541 | 5' | -51.7 | NC_001806.1 | + | 64950 | 0.67 | 0.974832 |
Target: 5'- aCCACCGGCgucgGCgCCCggg-CcGGGGGu -3' miRNA: 3'- -GGUGGUUGa---CGgGGGaauaGaUUCCC- -5' |
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5541 | 5' | -51.7 | NC_001806.1 | + | 105351 | 0.67 | 0.97737 |
Target: 5'- cCCGCCGGCUGCCgggacgCCCUgcugcaacuUAcCUccGGGa -3' miRNA: 3'- -GGUGGUUGACGG------GGGA---------AUaGAuuCCC- -5' |
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5541 | 5' | -51.7 | NC_001806.1 | + | 13112 | 0.67 | 0.983853 |
Target: 5'- uCCACCGuca-CCCCCUgcugGUaggcCUGGGGGg -3' miRNA: 3'- -GGUGGUugacGGGGGAa---UA----GAUUCCC- -5' |
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5541 | 5' | -51.7 | NC_001806.1 | + | 83303 | 0.67 | 0.983853 |
Target: 5'- cCCG-CAACccGCCCCCggAUCccugugggGAGGGg -3' miRNA: 3'- -GGUgGUUGa-CGGGGGaaUAGa-------UUCCC- -5' |
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5541 | 5' | -51.7 | NC_001806.1 | + | 57606 | 0.66 | 0.985666 |
Target: 5'- gCCGCCAAg-GCCCCgCcccGUC-AGGGGa -3' miRNA: 3'- -GGUGGUUgaCGGGG-Gaa-UAGaUUCCC- -5' |
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5541 | 5' | -51.7 | NC_001806.1 | + | 33333 | 0.68 | 0.970941 |
Target: 5'- gUCGCCGAC-GCCCCUUggccgccccggCUGcAGGGg -3' miRNA: 3'- -GGUGGUUGaCGGGGGAaua--------GAU-UCCC- -5' |
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5541 | 5' | -51.7 | NC_001806.1 | + | 96366 | 0.66 | 0.985666 |
Target: 5'- cCCGCCAugcgccaggGC-GCCCCCg---CgcGGGGg -3' miRNA: 3'- -GGUGGU---------UGaCGGGGGaauaGauUCCC- -5' |
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5541 | 5' | -51.7 | NC_001806.1 | + | 2710 | 0.66 | 0.987318 |
Target: 5'- gCCGCCAGCcGCCCaggggGUC--GGGGc -3' miRNA: 3'- -GGUGGUUGaCGGGggaa-UAGauUCCC- -5' |
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5541 | 5' | -51.7 | NC_001806.1 | + | 104762 | 0.66 | 0.987318 |
Target: 5'- aCGCCGuuCUGgCUCCUcaUAUCgGGGGGa -3' miRNA: 3'- gGUGGUu-GACgGGGGA--AUAGaUUCCC- -5' |
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5541 | 5' | -51.7 | NC_001806.1 | + | 126788 | 0.66 | 0.99018 |
Target: 5'- uCC-CCGACUGCCCCCcccacccgcAUCUGGu-- -3' miRNA: 3'- -GGuGGUUGACGGGGGaa-------UAGAUUccc -5' |
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5541 | 5' | -51.7 | NC_001806.1 | + | 98546 | 0.66 | 0.99018 |
Target: 5'- aCGCCAAC-GCCgCCaUGUUUGcGGGc -3' miRNA: 3'- gGUGGUUGaCGGgGGaAUAGAUuCCC- -5' |
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5541 | 5' | -51.7 | NC_001806.1 | + | 149114 | 0.66 | 0.99018 |
Target: 5'- cCCGCCucacaaagucCUGCCCCCcug-CUggccucggaaGAGGGg -3' miRNA: 3'- -GGUGGuu--------GACGGGGGaauaGA----------UUCCC- -5' |
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5541 | 5' | -51.7 | NC_001806.1 | + | 53919 | 0.66 | 0.991407 |
Target: 5'- gCCGCCGACcGCCUgCUcGUgCUccauGGGGg -3' miRNA: 3'- -GGUGGUUGaCGGGgGAaUA-GAu---UCCC- -5' |
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5541 | 5' | -51.7 | NC_001806.1 | + | 145382 | 1.13 | 0.004586 |
Target: 5'- aCCACCAACUGCCCCCUUAUCUAAGGGc -3' miRNA: 3'- -GGUGGUUGACGGGGGAAUAGAUUCCC- -5' |
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5541 | 5' | -51.7 | NC_001806.1 | + | 31180 | 0.68 | 0.969147 |
Target: 5'- aC-CCGACgGCCCCCgcGUCgGAGuGGa -3' miRNA: 3'- gGuGGUUGaCGGGGGaaUAGaUUC-CC- -5' |
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5541 | 5' | -51.7 | NC_001806.1 | + | 24061 | 0.68 | 0.969147 |
Target: 5'- -gACCGGC-GCCCCCgacgUGUCggcgcuGGGc -3' miRNA: 3'- ggUGGUUGaCGGGGGa---AUAGauu---CCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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