miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5542 3' -54.3 NC_001806.1 + 144553 1.13 0.002611
Target:  5'- gCGGGUGGUGCGAAAGACUUUCCGGGCg -3'
miRNA:   3'- -GCCCACCACGCUUUCUGAAAGGCCCG- -5'
5542 3' -54.3 NC_001806.1 + 57703 0.74 0.586958
Target:  5'- uCGGGaGGUcGCGAAAGuaacacgcguaacgGCUUccgcUCCGGGCg -3'
miRNA:   3'- -GCCCaCCA-CGCUUUC--------------UGAA----AGGCCCG- -5'
5542 3' -54.3 NC_001806.1 + 34394 0.74 0.61047
Target:  5'- uGGGUGGgcgGCGGuggccGGGCcgggCCGGGCc -3'
miRNA:   3'- gCCCACCa--CGCUu----UCUGaaa-GGCCCG- -5'
5542 3' -54.3 NC_001806.1 + 148557 0.74 0.620725
Target:  5'- uCGGGaUGGUGCuGAAcGACccgCUGGGCg -3'
miRNA:   3'- -GCCC-ACCACG-CUUuCUGaaaGGCCCG- -5'
5542 3' -54.3 NC_001806.1 + 3332 0.74 0.630989
Target:  5'- gCGGGUcccuccGGccGCGggGGGCUggcgggCCGGGCc -3'
miRNA:   3'- -GCCCA------CCa-CGCuuUCUGAaa----GGCCCG- -5'
5542 3' -54.3 NC_001806.1 + 101806 0.73 0.650486
Target:  5'- gGGGUuugugcgGGUGCGGuuGAUgagUUCCaGGGCg -3'
miRNA:   3'- gCCCA-------CCACGCUuuCUGa--AAGG-CCCG- -5'
5542 3' -54.3 NC_001806.1 + 151108 0.73 0.67197
Target:  5'- gCGGG-GGUcGCGggGGGC--UCCGGcGCc -3'
miRNA:   3'- -GCCCaCCA-CGCuuUCUGaaAGGCC-CG- -5'
5542 3' -54.3 NC_001806.1 + 16841 0.72 0.711426
Target:  5'- uGGGUGGUGUGGugugggaagguuuGGGGgUcUCCGGGg -3'
miRNA:   3'- gCCCACCACGCU-------------UUCUgAaAGGCCCg -5'
5542 3' -54.3 NC_001806.1 + 21207 0.72 0.722391
Target:  5'- uCGGGUGGgGCGcGGAGACggaggaGGGCg -3'
miRNA:   3'- -GCCCACCaCGC-UUUCUGaaagg-CCCG- -5'
5542 3' -54.3 NC_001806.1 + 57582 0.72 0.732278
Target:  5'- cCGGGaUGGUGCGAGAG-----UUGGGCg -3'
miRNA:   3'- -GCCC-ACCACGCUUUCugaaaGGCCCG- -5'
5542 3' -54.3 NC_001806.1 + 55592 0.7 0.798522
Target:  5'- gGGGUGGacGUGggGGGgcUUuuGGGCg -3'
miRNA:   3'- gCCCACCa-CGCuuUCUgaAAggCCCG- -5'
5542 3' -54.3 NC_001806.1 + 103722 0.7 0.807452
Target:  5'- gCGGGUGGUaacugGCGGGccGCUgacUCGGGCg -3'
miRNA:   3'- -GCCCACCA-----CGCUUucUGAaa-GGCCCG- -5'
5542 3' -54.3 NC_001806.1 + 2917 0.69 0.849541
Target:  5'- uCGGG-GGUcGCGGGccgccgccuccGGGCgg-CCGGGCc -3'
miRNA:   3'- -GCCCaCCA-CGCUU-----------UCUGaaaGGCCCG- -5'
5542 3' -54.3 NC_001806.1 + 41619 0.69 0.849541
Target:  5'- cCGGG-GGUGUGggGcccuGCUgUUCCGuGGCg -3'
miRNA:   3'- -GCCCaCCACGCuuUc---UGA-AAGGC-CCG- -5'
5542 3' -54.3 NC_001806.1 + 34518 0.69 0.857393
Target:  5'- cCGGG-GG-GUGGGAGcGCgggCCGGGCc -3'
miRNA:   3'- -GCCCaCCaCGCUUUC-UGaaaGGCCCG- -5'
5542 3' -54.3 NC_001806.1 + 19112 0.69 0.857393
Target:  5'- gGGGUGGggGCccGGGGCUgcguuucCCGGGUa -3'
miRNA:   3'- gCCCACCa-CGcuUUCUGAaa-----GGCCCG- -5'
5542 3' -54.3 NC_001806.1 + 6083 0.69 0.857393
Target:  5'- gCGGGcccgGGcgGCGggGGGCgggucucUCCGGcGCa -3'
miRNA:   3'- -GCCCa---CCa-CGCuuUCUGaa-----AGGCC-CG- -5'
5542 3' -54.3 NC_001806.1 + 110560 0.69 0.86504
Target:  5'- cCGGGUGGUGUuuguGcAAGAac--CCGGGUg -3'
miRNA:   3'- -GCCCACCACG----CuUUCUgaaaGGCCCG- -5'
5542 3' -54.3 NC_001806.1 + 25407 0.69 0.871006
Target:  5'- gCGGGaGGggGCGAGGGGCggugguggugCgCGGGCg -3'
miRNA:   3'- -GCCCaCCa-CGCUUUCUGaaa-------G-GCCCG- -5'
5542 3' -54.3 NC_001806.1 + 109238 0.69 0.872476
Target:  5'- cCGGGcGGgGCGGAauccuGGGCc--CCGGGCa -3'
miRNA:   3'- -GCCCaCCaCGCUU-----UCUGaaaGGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.