miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5542 3' -54.3 NC_001806.1 + 1438 0.66 0.959984
Target:  5'- cCGGGcGGcgccgGCGGcAGGGCcc-CCGGGCc -3'
miRNA:   3'- -GCCCaCCa----CGCU-UUCUGaaaGGCCCG- -5'
5542 3' -54.3 NC_001806.1 + 2805 0.66 0.959984
Target:  5'- gCGGGcUGG-GCGggGG-CgggCuCGGGCc -3'
miRNA:   3'- -GCCC-ACCaCGCuuUCuGaaaG-GCCCG- -5'
5542 3' -54.3 NC_001806.1 + 2917 0.69 0.849541
Target:  5'- uCGGG-GGUcGCGGGccgccgccuccGGGCgg-CCGGGCc -3'
miRNA:   3'- -GCCCaCCA-CGCUU-----------UCUGaaaGGCCCG- -5'
5542 3' -54.3 NC_001806.1 + 3332 0.74 0.630989
Target:  5'- gCGGGUcccuccGGccGCGggGGGCUggcgggCCGGGCc -3'
miRNA:   3'- -GCCCA------CCa-CGCuuUCUGAaa----GGCCCG- -5'
5542 3' -54.3 NC_001806.1 + 4427 0.66 0.956278
Target:  5'- gGGGUGGcccggGCGggGGcgGCguccgcCCGGGg -3'
miRNA:   3'- gCCCACCa----CGCuuUC--UGaaa---GGCCCg -5'
5542 3' -54.3 NC_001806.1 + 6083 0.69 0.857393
Target:  5'- gCGGGcccgGGcgGCGggGGGCgggucucUCCGGcGCa -3'
miRNA:   3'- -GCCCa---CCa-CGCuuUCUGaa-----AGGCC-CG- -5'
5542 3' -54.3 NC_001806.1 + 10388 0.67 0.93915
Target:  5'- uCGGGgGGgcgGgGGGAGGCgggagCCGGGg -3'
miRNA:   3'- -GCCCaCCa--CgCUUUCUGaaa--GGCCCg -5'
5542 3' -54.3 NC_001806.1 + 12658 0.67 0.943784
Target:  5'- aGGGcUGGUGCGA-GGACgg-CUGGuCg -3'
miRNA:   3'- gCCC-ACCACGCUuUCUGaaaGGCCcG- -5'
5542 3' -54.3 NC_001806.1 + 16841 0.72 0.711426
Target:  5'- uGGGUGGUGUGGugugggaagguuuGGGGgUcUCCGGGg -3'
miRNA:   3'- gCCCACCACGCU-------------UUCUgAaAGGCCCg -5'
5542 3' -54.3 NC_001806.1 + 19112 0.69 0.857393
Target:  5'- gGGGUGGggGCccGGGGCUgcguuucCCGGGUa -3'
miRNA:   3'- gCCCACCa-CGcuUUCUGAaa-----GGCCCG- -5'
5542 3' -54.3 NC_001806.1 + 21207 0.72 0.722391
Target:  5'- uCGGGUGGgGCGcGGAGACggaggaGGGCg -3'
miRNA:   3'- -GCCCACCaCGC-UUUCUGaaagg-CCCG- -5'
5542 3' -54.3 NC_001806.1 + 25101 0.67 0.934278
Target:  5'- gCGGGaGGggGCGAGGGGCgggaggGGGCg -3'
miRNA:   3'- -GCCCaCCa-CGCUUUCUGaaagg-CCCG- -5'
5542 3' -54.3 NC_001806.1 + 25135 0.67 0.934278
Target:  5'- gCGGGaGGggGCGAGGGGCgggaggGGGCg -3'
miRNA:   3'- -GCCCaCCa-CGCUUUCUGaaagg-CCCG- -5'
5542 3' -54.3 NC_001806.1 + 25169 0.67 0.934278
Target:  5'- gCGGGaGGggGCGAGGGGCgggaggGGGCg -3'
miRNA:   3'- -GCCCaCCa-CGCUUUCUGaaagg-CCCG- -5'
5542 3' -54.3 NC_001806.1 + 25203 0.67 0.934278
Target:  5'- gCGGGaGGggGCGAGGGGCgggaggGGGCg -3'
miRNA:   3'- -GCCCaCCa-CGCUUUCUGaaagg-CCCG- -5'
5542 3' -54.3 NC_001806.1 + 25237 0.67 0.934278
Target:  5'- gCGGGaGGggGCGAGGGGCgggaggGGGCg -3'
miRNA:   3'- -GCCCaCCa-CGCUUUCUGaaagg-CCCG- -5'
5542 3' -54.3 NC_001806.1 + 25271 0.67 0.934278
Target:  5'- gCGGGaGGggGCGAGGGGCgggaggGGGCg -3'
miRNA:   3'- -GCCCaCCa-CGCUUUCUGaaagg-CCCG- -5'
5542 3' -54.3 NC_001806.1 + 25305 0.67 0.934278
Target:  5'- gCGGGaGGggGCGAGGGGCgggaggGGGCg -3'
miRNA:   3'- -GCCCaCCa-CGCUUUCUGaaagg-CCCG- -5'
5542 3' -54.3 NC_001806.1 + 25339 0.67 0.934278
Target:  5'- gCGGGaGGggGCGAGGGGCgggaggGGGCg -3'
miRNA:   3'- -GCCCaCCa-CGCUUUCUGaaagg-CCCG- -5'
5542 3' -54.3 NC_001806.1 + 25407 0.69 0.871006
Target:  5'- gCGGGaGGggGCGAGGGGCggugguggugCgCGGGCg -3'
miRNA:   3'- -GCCCaCCa-CGCUUUCUGaaa-------G-GCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.