miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5542 3' -54.3 NC_001806.1 + 25535 0.68 0.906313
Target:  5'- aGGGcUGGggccGgGGAGGGCUggggCCGGGg -3'
miRNA:   3'- gCCC-ACCa---CgCUUUCUGAaa--GGCCCg -5'
5542 3' -54.3 NC_001806.1 + 25567 0.68 0.906313
Target:  5'- aGGGcUGGggccGgGGAGGGCUggggCCGGGg -3'
miRNA:   3'- gCCC-ACCa---CgCUUUCUGAaa--GGCCCg -5'
5542 3' -54.3 NC_001806.1 + 25599 0.68 0.906313
Target:  5'- aGGGcUGGggccGgGGAGGGCUggggCCGGGg -3'
miRNA:   3'- gCCC-ACCa---CgCUUUCUGAaa--GGCCCg -5'
5542 3' -54.3 NC_001806.1 + 29677 0.67 0.918218
Target:  5'- gCGGGcGG-GCGAggaaAGGGCgggCCGGGg -3'
miRNA:   3'- -GCCCaCCaCGCU----UUCUGaaaGGCCCg -5'
5542 3' -54.3 NC_001806.1 + 31433 0.69 0.879695
Target:  5'- uCGGGgagGGgaaaaGUGAAAGACa---CGGGCa -3'
miRNA:   3'- -GCCCa--CCa----CGCUUUCUGaaagGCCCG- -5'
5542 3' -54.3 NC_001806.1 + 32176 0.67 0.943784
Target:  5'- gGGGcGGUGCuucuuAGAGACcg-CCGGGg -3'
miRNA:   3'- gCCCaCCACGc----UUUCUGaaaGGCCCg -5'
5542 3' -54.3 NC_001806.1 + 32623 0.67 0.943784
Target:  5'- aGGGUGGgaGgGggGGAaaagaaCGGGCu -3'
miRNA:   3'- gCCCACCa-CgCuuUCUgaaag-GCCCG- -5'
5542 3' -54.3 NC_001806.1 + 33815 0.68 0.893464
Target:  5'- gCGGGUGGacucGCGggGGGCcgga-GGGUg -3'
miRNA:   3'- -GCCCACCa---CGCuuUCUGaaaggCCCG- -5'
5542 3' -54.3 NC_001806.1 + 34009 0.66 0.959984
Target:  5'- gGGcGUGG-GCGggGGuGCUcgucgaucgaCCGGGCu -3'
miRNA:   3'- gCC-CACCaCGCuuUC-UGAaa--------GGCCCG- -5'
5542 3' -54.3 NC_001806.1 + 34061 0.68 0.912385
Target:  5'- uGGGUGGgagaagGCGAgGAGACUg---GGGUg -3'
miRNA:   3'- gCCCACCa-----CGCU-UUCUGAaaggCCCG- -5'
5542 3' -54.3 NC_001806.1 + 34394 0.74 0.61047
Target:  5'- uGGGUGGgcgGCGGuggccGGGCcgggCCGGGCc -3'
miRNA:   3'- gCCCACCa--CGCUu----UCUGaaa-GGCCCG- -5'
5542 3' -54.3 NC_001806.1 + 34518 0.69 0.857393
Target:  5'- cCGGG-GG-GUGGGAGcGCgggCCGGGCc -3'
miRNA:   3'- -GCCCaCCaCGCUUUC-UGaaaGGCCCG- -5'
5542 3' -54.3 NC_001806.1 + 41619 0.69 0.849541
Target:  5'- cCGGG-GGUGUGggGcccuGCUgUUCCGuGGCg -3'
miRNA:   3'- -GCCCaCCACGCuuUc---UGA-AAGGC-CCG- -5'
5542 3' -54.3 NC_001806.1 + 41828 0.66 0.948182
Target:  5'- gCGGGggcGG-GCGucAGGGCc--CCGGGCg -3'
miRNA:   3'- -GCCCa--CCaCGCu-UUCUGaaaGGCCCG- -5'
5542 3' -54.3 NC_001806.1 + 55592 0.7 0.798522
Target:  5'- gGGGUGGacGUGggGGGgcUUuuGGGCg -3'
miRNA:   3'- gCCCACCa-CGCuuUCUgaAAggCCCG- -5'
5542 3' -54.3 NC_001806.1 + 57582 0.72 0.732278
Target:  5'- cCGGGaUGGUGCGAGAG-----UUGGGCg -3'
miRNA:   3'- -GCCC-ACCACGCUUUCugaaaGGCCCG- -5'
5542 3' -54.3 NC_001806.1 + 57703 0.74 0.586958
Target:  5'- uCGGGaGGUcGCGAAAGuaacacgcguaacgGCUUccgcUCCGGGCg -3'
miRNA:   3'- -GCCCaCCA-CGCUUUC--------------UGAA----AGGCCCG- -5'
5542 3' -54.3 NC_001806.1 + 57829 0.67 0.927584
Target:  5'- gCGGG-GGUGCGguGGGCgaccccgucuuaggUUUCUuuaGGGCc -3'
miRNA:   3'- -GCCCaCCACGCuuUCUG--------------AAAGG---CCCG- -5'
5542 3' -54.3 NC_001806.1 + 59121 0.67 0.934278
Target:  5'- aCGaGGUGGgcuucgGUGGugAGGGCag-CCGGGCc -3'
miRNA:   3'- -GC-CCACCa-----CGCU--UUCUGaaaGGCCCG- -5'
5542 3' -54.3 NC_001806.1 + 66831 0.66 0.948182
Target:  5'- cCGGGUGGccggugUGCGccgccuccuGGGGC---CCGGGCa -3'
miRNA:   3'- -GCCCACC------ACGCu--------UUCUGaaaGGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.