Results 21 - 40 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5542 | 3' | -54.3 | NC_001806.1 | + | 25271 | 0.67 | 0.934278 |
Target: 5'- gCGGGaGGggGCGAGGGGCgggaggGGGCg -3' miRNA: 3'- -GCCCaCCa-CGCUUUCUGaaagg-CCCG- -5' |
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5542 | 3' | -54.3 | NC_001806.1 | + | 25135 | 0.67 | 0.934278 |
Target: 5'- gCGGGaGGggGCGAGGGGCgggaggGGGCg -3' miRNA: 3'- -GCCCaCCa-CGCUUUCUGaaagg-CCCG- -5' |
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5542 | 3' | -54.3 | NC_001806.1 | + | 25237 | 0.67 | 0.934278 |
Target: 5'- gCGGGaGGggGCGAGGGGCgggaggGGGCg -3' miRNA: 3'- -GCCCaCCa-CGCUUUCUGaaagg-CCCG- -5' |
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5542 | 3' | -54.3 | NC_001806.1 | + | 25203 | 0.67 | 0.934278 |
Target: 5'- gCGGGaGGggGCGAGGGGCgggaggGGGCg -3' miRNA: 3'- -GCCCaCCa-CGCUUUCUGaaagg-CCCG- -5' |
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5542 | 3' | -54.3 | NC_001806.1 | + | 29677 | 0.67 | 0.918218 |
Target: 5'- gCGGGcGG-GCGAggaaAGGGCgggCCGGGg -3' miRNA: 3'- -GCCCaCCaCGCU----UUCUGaaaGGCCCg -5' |
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5542 | 3' | -54.3 | NC_001806.1 | + | 10388 | 0.67 | 0.93915 |
Target: 5'- uCGGGgGGgcgGgGGGAGGCgggagCCGGGg -3' miRNA: 3'- -GCCCaCCa--CgCUUUCUGaaa--GGCCCg -5' |
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5542 | 3' | -54.3 | NC_001806.1 | + | 147781 | 0.67 | 0.93915 |
Target: 5'- gCGGGgggcccgGG-GCGggGGGCggagCCuGGCa -3' miRNA: 3'- -GCCCa------CCaCGCuuUCUGaaa-GGcCCG- -5' |
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5542 | 3' | -54.3 | NC_001806.1 | + | 81641 | 0.67 | 0.93915 |
Target: 5'- uGGG-GGUGUcggucgGGAGGGCUgugUgGGGCg -3' miRNA: 3'- gCCCaCCACG------CUUUCUGAaa-GgCCCG- -5' |
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5542 | 3' | -54.3 | NC_001806.1 | + | 111544 | 0.67 | 0.93915 |
Target: 5'- aCGGGUGGccggGCGuuGGGguggaucuuagcCUccCCGGGCc -3' miRNA: 3'- -GCCCACCa---CGCuuUCU------------GAaaGGCCCG- -5' |
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5542 | 3' | -54.3 | NC_001806.1 | + | 32176 | 0.67 | 0.943784 |
Target: 5'- gGGGcGGUGCuucuuAGAGACcg-CCGGGg -3' miRNA: 3'- gCCCaCCACGc----UUUCUGaaaGGCCCg -5' |
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5542 | 3' | -54.3 | NC_001806.1 | + | 32623 | 0.67 | 0.943784 |
Target: 5'- aGGGUGGgaGgGggGGAaaagaaCGGGCu -3' miRNA: 3'- gCCCACCa-CgCuuUCUgaaag-GCCCG- -5' |
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5542 | 3' | -54.3 | NC_001806.1 | + | 144584 | 0.67 | 0.934278 |
Target: 5'- cCGGGUGccGCG----GCUcUCCGGGCc -3' miRNA: 3'- -GCCCACcaCGCuuucUGAaAGGCCCG- -5' |
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5542 | 3' | -54.3 | NC_001806.1 | + | 12658 | 0.67 | 0.943784 |
Target: 5'- aGGGcUGGUGCGA-GGACgg-CUGGuCg -3' miRNA: 3'- gCCC-ACCACGCUuUCUGaaaGGCCcG- -5' |
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5542 | 3' | -54.3 | NC_001806.1 | + | 25599 | 0.68 | 0.906313 |
Target: 5'- aGGGcUGGggccGgGGAGGGCUggggCCGGGg -3' miRNA: 3'- gCCC-ACCa---CgCUUUCUGAaa--GGCCCg -5' |
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5542 | 3' | -54.3 | NC_001806.1 | + | 33815 | 0.68 | 0.893464 |
Target: 5'- gCGGGUGGacucGCGggGGGCcgga-GGGUg -3' miRNA: 3'- -GCCCACCa---CGCuuUCUGaaaggCCCG- -5' |
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5542 | 3' | -54.3 | NC_001806.1 | + | 146828 | 0.68 | 0.900005 |
Target: 5'- uCGGGgagcagGGUGCGGc-GGCUccagCCGGGg -3' miRNA: 3'- -GCCCa-----CCACGCUuuCUGAaa--GGCCCg -5' |
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5542 | 3' | -54.3 | NC_001806.1 | + | 25535 | 0.68 | 0.906313 |
Target: 5'- aGGGcUGGggccGgGGAGGGCUggggCCGGGg -3' miRNA: 3'- gCCC-ACCa---CgCUUUCUGAaa--GGCCCg -5' |
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5542 | 3' | -54.3 | NC_001806.1 | + | 25567 | 0.68 | 0.906313 |
Target: 5'- aGGGcUGGggccGgGGAGGGCUggggCCGGGg -3' miRNA: 3'- gCCC-ACCa---CgCUUUCUGAaa--GGCCCg -5' |
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5542 | 3' | -54.3 | NC_001806.1 | + | 34061 | 0.68 | 0.912385 |
Target: 5'- uGGGUGGgagaagGCGAgGAGACUg---GGGUg -3' miRNA: 3'- gCCCACCa-----CGCU-UUCUGAaaggCCCG- -5' |
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5542 | 3' | -54.3 | NC_001806.1 | + | 83258 | 0.68 | 0.906313 |
Target: 5'- gCGGGgGG-GCGGgcGACggagggggUUCGGGCg -3' miRNA: 3'- -GCCCaCCaCGCUuuCUGaa------AGGCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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