miRNA display CGI


Results 1 - 20 of 61 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5542 3' -54.3 NC_001806.1 + 151430 0.67 0.929165
Target:  5'- gCGGG-GGcccaccgGCGggGGGCggcggCgGGGCg -3'
miRNA:   3'- -GCCCaCCa------CGCuuUCUGaaa--GgCCCG- -5'
5542 3' -54.3 NC_001806.1 + 151273 0.66 0.953946
Target:  5'- cCGGGcGGUGggggccggggcCGggGGGCggcggcggugggCCGGGCc -3'
miRNA:   3'- -GCCCaCCAC-----------GCuuUCUGaaa---------GGCCCG- -5'
5542 3' -54.3 NC_001806.1 + 151108 0.73 0.67197
Target:  5'- gCGGG-GGUcGCGggGGGC--UCCGGcGCc -3'
miRNA:   3'- -GCCCaCCA-CGCuuUCUGaaAGGCC-CG- -5'
5542 3' -54.3 NC_001806.1 + 148557 0.74 0.620725
Target:  5'- uCGGGaUGGUGCuGAAcGACccgCUGGGCg -3'
miRNA:   3'- -GCCC-ACCACG-CUUuCUGaaaGGCCCG- -5'
5542 3' -54.3 NC_001806.1 + 147781 0.67 0.93915
Target:  5'- gCGGGgggcccgGG-GCGggGGGCggagCCuGGCa -3'
miRNA:   3'- -GCCCa------CCaCGCuuUCUGaaa-GGcCCG- -5'
5542 3' -54.3 NC_001806.1 + 146828 0.68 0.900005
Target:  5'- uCGGGgagcagGGUGCGGc-GGCUccagCCGGGg -3'
miRNA:   3'- -GCCCa-----CCACGCUuuCUGAaa--GGCCCg -5'
5542 3' -54.3 NC_001806.1 + 144584 0.67 0.934278
Target:  5'- cCGGGUGccGCG----GCUcUCCGGGCc -3'
miRNA:   3'- -GCCCACcaCGCuuucUGAaAGGCCCG- -5'
5542 3' -54.3 NC_001806.1 + 144553 1.13 0.002611
Target:  5'- gCGGGUGGUGCGAAAGACUUUCCGGGCg -3'
miRNA:   3'- -GCCCACCACGCUUUCUGAAAGGCCCG- -5'
5542 3' -54.3 NC_001806.1 + 111544 0.67 0.93915
Target:  5'- aCGGGUGGccggGCGuuGGGguggaucuuagcCUccCCGGGCc -3'
miRNA:   3'- -GCCCACCa---CGCuuUCU------------GAaaGGCCCG- -5'
5542 3' -54.3 NC_001806.1 + 110560 0.69 0.86504
Target:  5'- cCGGGUGGUGUuuguGcAAGAac--CCGGGUg -3'
miRNA:   3'- -GCCCACCACG----CuUUCUgaaaGGCCCG- -5'
5542 3' -54.3 NC_001806.1 + 109238 0.69 0.872476
Target:  5'- cCGGGcGGgGCGGAauccuGGGCc--CCGGGCa -3'
miRNA:   3'- -GCCCaCCaCGCUU-----UCUGaaaGGCCCG- -5'
5542 3' -54.3 NC_001806.1 + 103722 0.7 0.807452
Target:  5'- gCGGGUGGUaacugGCGGGccGCUgacUCGGGCg -3'
miRNA:   3'- -GCCCACCA-----CGCUUucUGAaa-GGCCCG- -5'
5542 3' -54.3 NC_001806.1 + 101806 0.73 0.650486
Target:  5'- gGGGUuugugcgGGUGCGGuuGAUgagUUCCaGGGCg -3'
miRNA:   3'- gCCCA-------CCACGCUuuCUGa--AAGG-CCCG- -5'
5542 3' -54.3 NC_001806.1 + 95301 0.66 0.956278
Target:  5'- gCGGGgGGcGCGgcGGACgcgCCcaaGGGCg -3'
miRNA:   3'- -GCCCaCCaCGCuuUCUGaaaGG---CCCG- -5'
5542 3' -54.3 NC_001806.1 + 95044 0.66 0.959984
Target:  5'- cCGcGGUGGccGUGGAAcuGGCgcugUUCGGGCg -3'
miRNA:   3'- -GC-CCACCa-CGCUUU--CUGaa--AGGCCCG- -5'
5542 3' -54.3 NC_001806.1 + 91376 0.66 0.959984
Target:  5'- -aGGUGGaccGCGAGGGACacguggugcCCGGGUu -3'
miRNA:   3'- gcCCACCa--CGCUUUCUGaaa------GGCCCG- -5'
5542 3' -54.3 NC_001806.1 + 84896 0.66 0.963468
Target:  5'- gGGcGUGGUGCGucGGGCcucCCGGa- -3'
miRNA:   3'- gCC-CACCACGCuuUCUGaaaGGCCcg -5'
5542 3' -54.3 NC_001806.1 + 83258 0.68 0.906313
Target:  5'- gCGGGgGG-GCGGgcGACggagggggUUCGGGCg -3'
miRNA:   3'- -GCCCaCCaCGCUuuCUGaa------AGGCCCG- -5'
5542 3' -54.3 NC_001806.1 + 81641 0.67 0.93915
Target:  5'- uGGG-GGUGUcggucgGGAGGGCUgugUgGGGCg -3'
miRNA:   3'- gCCCaCCACG------CUUUCUGAaa-GgCCCG- -5'
5542 3' -54.3 NC_001806.1 + 77280 0.66 0.956278
Target:  5'- cCGGGgaccuggccccaUGGgcgGUGGAGGAg-UUCCGGGg -3'
miRNA:   3'- -GCCC------------ACCa--CGCUUUCUgaAAGGCCCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.