miRNA display CGI


Results 41 - 60 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5542 5' -67.5 NC_001806.1 + 30041 0.69 0.253399
Target:  5'- -gGCCGaggGGC-CggaCGGGCCCCCUUGu -3'
miRNA:   3'- caCGGCg--CCGaGag-GCCCGGGGGGAC- -5'
5542 5' -67.5 NC_001806.1 + 125706 0.69 0.259116
Target:  5'- uUGCugCGCGGCg-UCCGcGCCCCUCUGg -3'
miRNA:   3'- cACG--GCGCCGagAGGCcCGGGGGGAC- -5'
5542 5' -67.5 NC_001806.1 + 132839 0.69 0.264938
Target:  5'- -cGcCCGCGGC-CgUCGGGCCCgUCUGg -3'
miRNA:   3'- caC-GGCGCCGaGaGGCCCGGGgGGAC- -5'
5542 5' -67.5 NC_001806.1 + 7476 0.69 0.264351
Target:  5'- -gGCuCGCGGgUCUguauagcCCGGgcaaguauGCCCCCCUGg -3'
miRNA:   3'- caCG-GCGCCgAGA-------GGCC--------CGGGGGGAC- -5'
5542 5' -67.5 NC_001806.1 + 118748 0.69 0.270865
Target:  5'- -gGCCGCGGgaaUCcCCuGGCCgCCCUGa -3'
miRNA:   3'- caCGGCGCCg--AGaGGcCCGGgGGGAC- -5'
5542 5' -67.5 NC_001806.1 + 17155 0.7 0.20652
Target:  5'- -cGCUGcCGGUcgCUCCaaGGGCCCCCCc- -3'
miRNA:   3'- caCGGC-GCCGa-GAGG--CCCGGGGGGac -5'
5542 5' -67.5 NC_001806.1 + 66745 0.7 0.20652
Target:  5'- -cGCCGCGc----CCGGGCCCCCCa- -3'
miRNA:   3'- caCGGCGCcgagaGGCCCGGGGGGac -5'
5542 5' -67.5 NC_001806.1 + 151113 0.7 0.20652
Target:  5'- -gGUCGCGGggggCUCCGGcGCCCCCUc- -3'
miRNA:   3'- caCGGCGCCga--GAGGCC-CGGGGGGac -5'
5542 5' -67.5 NC_001806.1 + 30646 0.7 0.211334
Target:  5'- -gGgCGCGGCcagggugggC-CCGGGaCCCCCCUGa -3'
miRNA:   3'- caCgGCGCCGa--------GaGGCCC-GGGGGGAC- -5'
5542 5' -67.5 NC_001806.1 + 19205 0.7 0.216244
Target:  5'- -aGCCGCaGGUUUacCCGGGCCCgCUUGg -3'
miRNA:   3'- caCGGCG-CCGAGa-GGCCCGGGgGGAC- -5'
5542 5' -67.5 NC_001806.1 + 30160 0.7 0.216244
Target:  5'- aUGCCa-GGCUCcgccccccgccCCGGGCCCCCCg- -3'
miRNA:   3'- cACGGcgCCGAGa----------GGCCCGGGGGGac -5'
5542 5' -67.5 NC_001806.1 + 111660 0.7 0.224303
Target:  5'- aUGCCGCGGCcauggugccgaCCGGGUCCCuCCUu -3'
miRNA:   3'- cACGGCGCCGaga--------GGCCCGGGG-GGAc -5'
5542 5' -67.5 NC_001806.1 + 5831 0.7 0.226357
Target:  5'- -cGcCCGuUGGCcgUCcCCGGGCCCCCCg- -3'
miRNA:   3'- caC-GGC-GCCG--AGaGGCCCGGGGGGac -5'
5542 5' -67.5 NC_001806.1 + 25841 0.71 0.199015
Target:  5'- cGUGCUcuguugguuucaccuGUGGCagC-CCGGGCCCCCCg- -3'
miRNA:   3'- -CACGG---------------CGCCGa-GaGGCCCGGGGGGac -5'
5542 5' -67.5 NC_001806.1 + 26974 0.71 0.197177
Target:  5'- -cGCCGCGGCUCg-UGGGCCCgCgaGc -3'
miRNA:   3'- caCGGCGCCGAGagGCCCGGGgGgaC- -5'
5542 5' -67.5 NC_001806.1 + 20648 0.72 0.152154
Target:  5'- -gGCCGCGGCca--CGGGCCCCCg-- -3'
miRNA:   3'- caCGGCGCCGagagGCCCGGGGGgac -5'
5542 5' -67.5 NC_001806.1 + 147283 0.72 0.154717
Target:  5'- -gGCCGCcgaggacgucagggGGgUC-CCGGGCCCaCCCUGg -3'
miRNA:   3'- caCGGCG--------------CCgAGaGGCCCGGG-GGGAC- -5'
5542 5' -67.5 NC_001806.1 + 74865 0.72 0.163415
Target:  5'- -gGCCGUccuGGCgaccCUgCGGGCCUCCCUGc -3'
miRNA:   3'- caCGGCG---CCGa---GAgGCCCGGGGGGAC- -5'
5542 5' -67.5 NC_001806.1 + 144830 0.73 0.138236
Target:  5'- -cGaCCGCGGCggUCCGGGCCCCguCCg- -3'
miRNA:   3'- caC-GGCGCCGagAGGCCCGGGG--GGac -5'
5542 5' -67.5 NC_001806.1 + 126882 0.73 0.128574
Target:  5'- -cGCCGgGGCUCUCgGGGCCgcaggaCCCa- -3'
miRNA:   3'- caCGGCgCCGAGAGgCCCGGg-----GGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.