miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5542 5' -67.5 NC_001806.1 + 135780 0.67 0.336053
Target:  5'- -aGCUGCGGCgC-CCGc-CCCCCCUGg -3'
miRNA:   3'- caCGGCGCCGaGaGGCccGGGGGGAC- -5'
5542 5' -67.5 NC_001806.1 + 31769 0.67 0.343168
Target:  5'- -aGCCGCGGC---CCGGGCUgCCUg- -3'
miRNA:   3'- caCGGCGCCGagaGGCCCGGgGGGac -5'
5542 5' -67.5 NC_001806.1 + 73945 0.67 0.35039
Target:  5'- -cGaCGCGGuCUCacagcacgCCGGGCCCCUCg- -3'
miRNA:   3'- caCgGCGCC-GAGa-------GGCCCGGGGGGac -5'
5542 5' -67.5 NC_001806.1 + 38394 0.68 0.308679
Target:  5'- -cGCgGCGGCUCUCCgccggcucggggGGGUCCUCg-- -3'
miRNA:   3'- caCGgCGCCGAGAGG------------CCCGGGGGgac -5'
5542 5' -67.5 NC_001806.1 + 23105 0.68 0.31536
Target:  5'- -cGCCGgGGC-C-CUGGGCCCCgCgCUGc -3'
miRNA:   3'- caCGGCgCCGaGaGGCCCGGGG-G-GAC- -5'
5542 5' -67.5 NC_001806.1 + 67482 0.68 0.302107
Target:  5'- cGUGCUgGCcGCcCUCCGGGgucccgaCCCCCUGg -3'
miRNA:   3'- -CACGG-CGcCGaGAGGCCCg------GGGGGAC- -5'
5542 5' -67.5 NC_001806.1 + 68115 0.68 0.28304
Target:  5'- -aGaCCGCGGuCUCccgUCCGaGGCCCCCg-- -3'
miRNA:   3'- caC-GGCGCC-GAG---AGGC-CCGGGGGgac -5'
5542 5' -67.5 NC_001806.1 + 21496 0.68 0.28304
Target:  5'- -cGCCGcCGGCga-CCGGGCCCcggCCCg- -3'
miRNA:   3'- caCGGC-GCCGagaGGCCCGGG---GGGac -5'
5542 5' -67.5 NC_001806.1 + 23714 0.68 0.28304
Target:  5'- -cGCCgcGCGGUgcgCCGGGCCCgCCCc- -3'
miRNA:   3'- caCGG--CGCCGagaGGCCCGGG-GGGac -5'
5542 5' -67.5 NC_001806.1 + 116547 0.68 0.288658
Target:  5'- cGUGgCGCGGCUCguggccaggggcaUCCGGGaCCugaaCCCCa- -3'
miRNA:   3'- -CACgGCGCCGAG-------------AGGCCC-GG----GGGGac -5'
5542 5' -67.5 NC_001806.1 + 84309 0.68 0.295003
Target:  5'- cGUGCUuacUGGCUggcccugcgcagaCUCCGGGCCUCCgUGg -3'
miRNA:   3'- -CACGGc--GCCGA-------------GAGGCCCGGGGGgAC- -5'
5542 5' -67.5 NC_001806.1 + 135866 0.68 0.31536
Target:  5'- -gGCCGgGGCgUCUaucaGGuGCCCCCCg- -3'
miRNA:   3'- caCGGCgCCG-AGAgg--CC-CGGGGGGac -5'
5542 5' -67.5 NC_001806.1 + 123754 0.68 0.31536
Target:  5'- ---aCGgGGC-CUCCGGGCgCCCCa- -3'
miRNA:   3'- cacgGCgCCGaGAGGCCCGgGGGGac -5'
5542 5' -67.5 NC_001806.1 + 59617 0.68 0.302107
Target:  5'- -cGCCGgGGC-CUUgGGGCCCCggCCg- -3'
miRNA:   3'- caCGGCgCCGaGAGgCCCGGGG--GGac -5'
5542 5' -67.5 NC_001806.1 + 30452 0.68 0.276899
Target:  5'- --cCCGCGGCgccgccccCUCCGGcGCCgCCCCg- -3'
miRNA:   3'- cacGGCGCCGa-------GAGGCC-CGG-GGGGac -5'
5542 5' -67.5 NC_001806.1 + 125706 0.69 0.259116
Target:  5'- uUGCugCGCGGCg-UCCGcGCCCCUCUGg -3'
miRNA:   3'- cACG--GCGCCGagAGGCcCGGGGGGAC- -5'
5542 5' -67.5 NC_001806.1 + 30041 0.69 0.253399
Target:  5'- -gGCCGaggGGC-CggaCGGGCCCCCUUGu -3'
miRNA:   3'- caCGGCg--CCGaGag-GCCCGGGGGGAC- -5'
5542 5' -67.5 NC_001806.1 + 76820 0.69 0.247785
Target:  5'- -gGCCaGCGGCgacggC-CCGGGCCUCCUa- -3'
miRNA:   3'- caCGG-CGCCGa----GaGGCCCGGGGGGac -5'
5542 5' -67.5 NC_001806.1 + 65456 0.69 0.247785
Target:  5'- aUGCCGCGGCcC-CCGGGUCCugggggcgCCCg- -3'
miRNA:   3'- cACGGCGCCGaGaGGCCCGGG--------GGGac -5'
5542 5' -67.5 NC_001806.1 + 68463 0.69 0.247785
Target:  5'- -gGUgGUGGCUCUCCccgaGGCCCCCg-- -3'
miRNA:   3'- caCGgCGCCGAGAGGc---CCGGGGGgac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.