miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5542 5' -67.5 NC_001806.1 + 29961 0.67 0.35772
Target:  5'- -aGCCGCGGCg--CCGcggggggcgucuGGCCCCuCCg- -3'
miRNA:   3'- caCGGCGCCGagaGGC------------CCGGGG-GGac -5'
5542 5' -67.5 NC_001806.1 + 30041 0.69 0.253399
Target:  5'- -gGCCGaggGGC-CggaCGGGCCCCCUUGu -3'
miRNA:   3'- caCGGCg--CCGaGag-GCCCGGGGGGAC- -5'
5542 5' -67.5 NC_001806.1 + 30160 0.7 0.216244
Target:  5'- aUGCCa-GGCUCcgccccccgccCCGGGCCCCCCg- -3'
miRNA:   3'- cACGGcgCCGAGa----------GGCCCGGGGGGac -5'
5542 5' -67.5 NC_001806.1 + 30452 0.68 0.276899
Target:  5'- --cCCGCGGCgccgccccCUCCGGcGCCgCCCCg- -3'
miRNA:   3'- cacGGCGCCGa-------GAGGCC-CGG-GGGGac -5'
5542 5' -67.5 NC_001806.1 + 30646 0.7 0.211334
Target:  5'- -gGgCGCGGCcagggugggC-CCGGGaCCCCCCUGa -3'
miRNA:   3'- caCgGCGCCGa--------GaGGCCC-GGGGGGAC- -5'
5542 5' -67.5 NC_001806.1 + 31769 0.67 0.343168
Target:  5'- -aGCCGCGGC---CCGGGCUgCCUg- -3'
miRNA:   3'- caCGGCGCCGagaGGCCCGGgGGGac -5'
5542 5' -67.5 NC_001806.1 + 32680 0.67 0.336053
Target:  5'- aGUGgCGUGGCcgaccuuagcCUCUgGGGCgCCCCCUGu -3'
miRNA:   3'- -CACgGCGCCGa---------GAGG-CCCG-GGGGGAC- -5'
5542 5' -67.5 NC_001806.1 + 33135 0.67 0.35039
Target:  5'- -cGCCGCGG-UCgg-GGGCCCCUCg- -3'
miRNA:   3'- caCGGCGCCgAGaggCCCGGGGGGac -5'
5542 5' -67.5 NC_001806.1 + 38394 0.68 0.308679
Target:  5'- -cGCgGCGGCUCUCCgccggcucggggGGGUCCUCg-- -3'
miRNA:   3'- caCGgCGCCGAGAGG------------CCCGGGGGgac -5'
5542 5' -67.5 NC_001806.1 + 38662 0.66 0.371941
Target:  5'- gGUGCCGgggcCGGCUCUCCcaaaccccuccucGuuccGCCCCCCg- -3'
miRNA:   3'- -CACGGC----GCCGAGAGG-------------Cc---CGGGGGGac -5'
5542 5' -67.5 NC_001806.1 + 39190 0.67 0.356982
Target:  5'- -gGCgGCGGCcuugUCUgcguucuugggggCCGGGCCCCgCCg- -3'
miRNA:   3'- caCGgCGCCG----AGA-------------GGCCCGGGG-GGac -5'
5542 5' -67.5 NC_001806.1 + 49645 0.66 0.403913
Target:  5'- cGUGCCG-GGCccggagCUCCGGGCggcauuCCCgUUGg -3'
miRNA:   3'- -CACGGCgCCGa-----GAGGCCCG------GGGgGAC- -5'
5542 5' -67.5 NC_001806.1 + 57050 0.69 0.24723
Target:  5'- -gGCCGgggccccCGGCUgCgugCCGGGCUCCCCg- -3'
miRNA:   3'- caCGGC-------GCCGA-Ga--GGCCCGGGGGGac -5'
5542 5' -67.5 NC_001806.1 + 59617 0.68 0.302107
Target:  5'- -cGCCGgGGC-CUUgGGGCCCCggCCg- -3'
miRNA:   3'- caCGGCgCCGaGAGgCCCGGGG--GGac -5'
5542 5' -67.5 NC_001806.1 + 65456 0.69 0.247785
Target:  5'- aUGCCGCGGCcC-CCGGGUCCugggggcgCCCg- -3'
miRNA:   3'- cACGGCGCCGaGaGGCCCGGG--------GGGac -5'
5542 5' -67.5 NC_001806.1 + 66745 0.7 0.20652
Target:  5'- -cGCCGCGc----CCGGGCCCCCCa- -3'
miRNA:   3'- caCGGCGCcgagaGGCCCGGGGGGac -5'
5542 5' -67.5 NC_001806.1 + 67482 0.68 0.302107
Target:  5'- cGUGCUgGCcGCcCUCCGGGgucccgaCCCCCUGg -3'
miRNA:   3'- -CACGG-CGcCGaGAGGCCCg------GGGGGAC- -5'
5542 5' -67.5 NC_001806.1 + 68115 0.68 0.28304
Target:  5'- -aGaCCGCGGuCUCccgUCCGaGGCCCCCg-- -3'
miRNA:   3'- caC-GGCGCC-GAG---AGGC-CCGGGGGgac -5'
5542 5' -67.5 NC_001806.1 + 68463 0.69 0.247785
Target:  5'- -gGUgGUGGCUCUCCccgaGGCCCCCg-- -3'
miRNA:   3'- caCGgCGCCGAGAGGc---CCGGGGGgac -5'
5542 5' -67.5 NC_001806.1 + 72408 0.66 0.402313
Target:  5'- -gGCCGCGGCUCUgcaucuuuaCgGGGCCagcgagacuuaCCUGc -3'
miRNA:   3'- caCGGCGCCGAGA---------GgCCCGGgg---------GGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.