miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5542 5' -67.5 NC_001806.1 + 30160 0.7 0.216244
Target:  5'- aUGCCa-GGCUCcgccccccgccCCGGGCCCCCCg- -3'
miRNA:   3'- cACGGcgCCGAGa----------GGCCCGGGGGGac -5'
5542 5' -67.5 NC_001806.1 + 19205 0.7 0.216244
Target:  5'- -aGCCGCaGGUUUacCCGGGCCCgCUUGg -3'
miRNA:   3'- caCGGCG-CCGAGa-GGCCCGGGgGGAC- -5'
5542 5' -67.5 NC_001806.1 + 111660 0.7 0.224303
Target:  5'- aUGCCGCGGCcauggugccgaCCGGGUCCCuCCUu -3'
miRNA:   3'- cACGGCGCCGaga--------GGCCCGGGG-GGAc -5'
5542 5' -67.5 NC_001806.1 + 5831 0.7 0.226357
Target:  5'- -cGcCCGuUGGCcgUCcCCGGGCCCCCCg- -3'
miRNA:   3'- caC-GGC-GCCG--AGaGGCCCGGGGGGac -5'
5542 5' -67.5 NC_001806.1 + 57050 0.69 0.24723
Target:  5'- -gGCCGgggccccCGGCUgCgugCCGGGCUCCCCg- -3'
miRNA:   3'- caCGGC-------GCCGA-Ga--GGCCCGGGGGGac -5'
5542 5' -67.5 NC_001806.1 + 76820 0.69 0.247785
Target:  5'- -gGCCaGCGGCgacggC-CCGGGCCUCCUa- -3'
miRNA:   3'- caCGG-CGCCGa----GaGGCCCGGGGGGac -5'
5542 5' -67.5 NC_001806.1 + 65456 0.69 0.247785
Target:  5'- aUGCCGCGGCcC-CCGGGUCCugggggcgCCCg- -3'
miRNA:   3'- cACGGCGCCGaGaGGCCCGGG--------GGGac -5'
5542 5' -67.5 NC_001806.1 + 68463 0.69 0.247785
Target:  5'- -gGUgGUGGCUCUCCccgaGGCCCCCg-- -3'
miRNA:   3'- caCGgCGCCGAGAGGc---CCGGGGGgac -5'
5542 5' -67.5 NC_001806.1 + 30041 0.69 0.253399
Target:  5'- -gGCCGaggGGC-CggaCGGGCCCCCUUGu -3'
miRNA:   3'- caCGGCg--CCGaGag-GCCCGGGGGGAC- -5'
5542 5' -67.5 NC_001806.1 + 125706 0.69 0.259116
Target:  5'- uUGCugCGCGGCg-UCCGcGCCCCUCUGg -3'
miRNA:   3'- cACG--GCGCCGagAGGCcCGGGGGGAC- -5'
5542 5' -67.5 NC_001806.1 + 7476 0.69 0.264351
Target:  5'- -gGCuCGCGGgUCUguauagcCCGGgcaaguauGCCCCCCUGg -3'
miRNA:   3'- caCG-GCGCCgAGA-------GGCC--------CGGGGGGAC- -5'
5542 5' -67.5 NC_001806.1 + 132839 0.69 0.264938
Target:  5'- -cGcCCGCGGC-CgUCGGGCCCgUCUGg -3'
miRNA:   3'- caC-GGCGCCGaGaGGCCCGGGgGGAC- -5'
5542 5' -67.5 NC_001806.1 + 118748 0.69 0.270865
Target:  5'- -gGCCGCGGgaaUCcCCuGGCCgCCCUGa -3'
miRNA:   3'- caCGGCGCCg--AGaGGcCCGGgGGGAC- -5'
5542 5' -67.5 NC_001806.1 + 2278 0.69 0.270865
Target:  5'- -cGCCGCgcucGGCggaccaCUCCGgcGGCCCCCCc- -3'
miRNA:   3'- caCGGCG----CCGa-----GAGGC--CCGGGGGGac -5'
5542 5' -67.5 NC_001806.1 + 30452 0.68 0.276899
Target:  5'- --cCCGCGGCgccgccccCUCCGGcGCCgCCCCg- -3'
miRNA:   3'- cacGGCGCCGa-------GAGGCC-CGG-GGGGac -5'
5542 5' -67.5 NC_001806.1 + 68115 0.68 0.28304
Target:  5'- -aGaCCGCGGuCUCccgUCCGaGGCCCCCg-- -3'
miRNA:   3'- caC-GGCGCC-GAG---AGGC-CCGGGGGgac -5'
5542 5' -67.5 NC_001806.1 + 21496 0.68 0.28304
Target:  5'- -cGCCGcCGGCga-CCGGGCCCcggCCCg- -3'
miRNA:   3'- caCGGC-GCCGagaGGCCCGGG---GGGac -5'
5542 5' -67.5 NC_001806.1 + 23714 0.68 0.28304
Target:  5'- -cGCCgcGCGGUgcgCCGGGCCCgCCCc- -3'
miRNA:   3'- caCGG--CGCCGagaGGCCCGGG-GGGac -5'
5542 5' -67.5 NC_001806.1 + 116547 0.68 0.288658
Target:  5'- cGUGgCGCGGCUCguggccaggggcaUCCGGGaCCugaaCCCCa- -3'
miRNA:   3'- -CACgGCGCCGAG-------------AGGCCC-GG----GGGGac -5'
5542 5' -67.5 NC_001806.1 + 84309 0.68 0.295003
Target:  5'- cGUGCUuacUGGCUggcccugcgcagaCUCCGGGCCUCCgUGg -3'
miRNA:   3'- -CACGGc--GCCGA-------------GAGGCCCGGGGGgAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.