miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5542 5' -67.5 NC_001806.1 + 144587 1.06 0.000467
Target:  5'- gGUGCCGCGGCUCUCCGGGCCCCCCUGc -3'
miRNA:   3'- -CACGGCGCCGAGAGGCCCGGGGGGAC- -5'
5542 5' -67.5 NC_001806.1 + 21134 0.76 0.078615
Target:  5'- -cGCCcCGGCUCcCCGGGCCCCaCCg- -3'
miRNA:   3'- caCGGcGCCGAGaGGCCCGGGG-GGac -5'
5542 5' -67.5 NC_001806.1 + 140940 0.76 0.078615
Target:  5'- -cGCUGUGGCcucccgUUCCGGGCCCCCgUGu -3'
miRNA:   3'- caCGGCGCCGa-----GAGGCCCGGGGGgAC- -5'
5542 5' -67.5 NC_001806.1 + 22052 0.76 0.089014
Target:  5'- -aGCCGUGGCcCggcgCCGGGCCCCCg-- -3'
miRNA:   3'- caCGGCGCCGaGa---GGCCCGGGGGgac -5'
5542 5' -67.5 NC_001806.1 + 135598 0.75 0.09353
Target:  5'- -cGCUGCuGGCgCUCCaGGGCCCCCgCUGu -3'
miRNA:   3'- caCGGCG-CCGaGAGG-CCCGGGGG-GAC- -5'
5542 5' -67.5 NC_001806.1 + 84820 0.75 0.098262
Target:  5'- -cGCCGCGGCUCcggcCCGGGCCCUa--- -3'
miRNA:   3'- caCGGCGCCGAGa---GGCCCGGGGggac -5'
5542 5' -67.5 NC_001806.1 + 3675 0.75 0.100712
Target:  5'- -cGCCGgGGCUCcCCGcGGCCCCCg-- -3'
miRNA:   3'- caCGGCgCCGAGaGGC-CCGGGGGgac -5'
5542 5' -67.5 NC_001806.1 + 29854 0.74 0.116662
Target:  5'- -gGCCGCGGCUCggaCaGcGCCCCCCUc -3'
miRNA:   3'- caCGGCGCCGAGag-GcC-CGGGGGGAc -5'
5542 5' -67.5 NC_001806.1 + 26252 0.73 0.128574
Target:  5'- -gGUgGCGGCgggcagC-CCGGGCCCCCCg- -3'
miRNA:   3'- caCGgCGCCGa-----GaGGCCCGGGGGGac -5'
5542 5' -67.5 NC_001806.1 + 126882 0.73 0.128574
Target:  5'- -cGCCGgGGCUCUCgGGGCCgcaggaCCCa- -3'
miRNA:   3'- caCGGCgCCGAGAGgCCCGGg-----GGGac -5'
5542 5' -67.5 NC_001806.1 + 144830 0.73 0.138236
Target:  5'- -cGaCCGCGGCggUCCGGGCCCCguCCg- -3'
miRNA:   3'- caC-GGCGCCGagAGGCCCGGGG--GGac -5'
5542 5' -67.5 NC_001806.1 + 20648 0.72 0.152154
Target:  5'- -gGCCGCGGCca--CGGGCCCCCg-- -3'
miRNA:   3'- caCGGCGCCGagagGCCCGGGGGgac -5'
5542 5' -67.5 NC_001806.1 + 147283 0.72 0.154717
Target:  5'- -gGCCGCcgaggacgucagggGGgUC-CCGGGCCCaCCCUGg -3'
miRNA:   3'- caCGGCG--------------CCgAGaGGCCCGGG-GGGAC- -5'
5542 5' -67.5 NC_001806.1 + 74865 0.72 0.163415
Target:  5'- -gGCCGUccuGGCgaccCUgCGGGCCUCCCUGc -3'
miRNA:   3'- caCGGCG---CCGa---GAgGCCCGGGGGGAC- -5'
5542 5' -67.5 NC_001806.1 + 26974 0.71 0.197177
Target:  5'- -cGCCGCGGCUCg-UGGGCCCgCgaGc -3'
miRNA:   3'- caCGGCGCCGAGagGCCCGGGgGgaC- -5'
5542 5' -67.5 NC_001806.1 + 25841 0.71 0.199015
Target:  5'- cGUGCUcuguugguuucaccuGUGGCagC-CCGGGCCCCCCg- -3'
miRNA:   3'- -CACGG---------------CGCCGa-GaGGCCCGGGGGGac -5'
5542 5' -67.5 NC_001806.1 + 151113 0.7 0.20652
Target:  5'- -gGUCGCGGggggCUCCGGcGCCCCCUc- -3'
miRNA:   3'- caCGGCGCCga--GAGGCC-CGGGGGGac -5'
5542 5' -67.5 NC_001806.1 + 66745 0.7 0.20652
Target:  5'- -cGCCGCGc----CCGGGCCCCCCa- -3'
miRNA:   3'- caCGGCGCcgagaGGCCCGGGGGGac -5'
5542 5' -67.5 NC_001806.1 + 17155 0.7 0.20652
Target:  5'- -cGCUGcCGGUcgCUCCaaGGGCCCCCCc- -3'
miRNA:   3'- caCGGC-GCCGa-GAGG--CCCGGGGGGac -5'
5542 5' -67.5 NC_001806.1 + 30646 0.7 0.211334
Target:  5'- -gGgCGCGGCcagggugggC-CCGGGaCCCCCCUGa -3'
miRNA:   3'- caCgGCGCCGa--------GaGGCCC-GGGGGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.