miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5542 5' -67.5 NC_001806.1 + 2278 0.69 0.270865
Target:  5'- -cGCCGCgcucGGCggaccaCUCCGgcGGCCCCCCc- -3'
miRNA:   3'- caCGGCG----CCGa-----GAGGC--CCGGGGGGac -5'
5542 5' -67.5 NC_001806.1 + 3344 0.66 0.41197
Target:  5'- -gGCCGCGGggggcuggCgggCCGGGCCCCggCCa- -3'
miRNA:   3'- caCGGCGCCga------Ga--GGCCCGGGG--GGac -5'
5542 5' -67.5 NC_001806.1 + 3675 0.75 0.100712
Target:  5'- -cGCCGgGGCUCcCCGcGGCCCCCg-- -3'
miRNA:   3'- caCGGCgCCGAGaGGC-CCGGGGGgac -5'
5542 5' -67.5 NC_001806.1 + 5831 0.7 0.226357
Target:  5'- -cGcCCGuUGGCcgUCcCCGGGCCCCCCg- -3'
miRNA:   3'- caC-GGC-GCCG--AGaGGCCCGGGGGGac -5'
5542 5' -67.5 NC_001806.1 + 6829 0.67 0.331837
Target:  5'- cUGCUGC-GCUCUcCCGGGCugcugcccgaaaucgCCCCCa- -3'
miRNA:   3'- cACGGCGcCGAGA-GGCCCG---------------GGGGGac -5'
5542 5' -67.5 NC_001806.1 + 7476 0.69 0.264351
Target:  5'- -gGCuCGCGGgUCUguauagcCCGGgcaaguauGCCCCCCUGg -3'
miRNA:   3'- caCG-GCGCCgAGA-------GGCC--------CGGGGGGAC- -5'
5542 5' -67.5 NC_001806.1 + 16499 0.66 0.380348
Target:  5'- -cGCCGCGGCUga-UGGcucgagccGCCUCCCUGu -3'
miRNA:   3'- caCGGCGCCGAgagGCC--------CGGGGGGAC- -5'
5542 5' -67.5 NC_001806.1 + 17155 0.7 0.20652
Target:  5'- -cGCUGcCGGUcgCUCCaaGGGCCCCCCc- -3'
miRNA:   3'- caCGGC-GCCGa-GAGG--CCCGGGGGGac -5'
5542 5' -67.5 NC_001806.1 + 19205 0.7 0.216244
Target:  5'- -aGCCGCaGGUUUacCCGGGCCCgCUUGg -3'
miRNA:   3'- caCGGCG-CCGAGa-GGCCCGGGgGGAC- -5'
5542 5' -67.5 NC_001806.1 + 20648 0.72 0.152154
Target:  5'- -gGCCGCGGCca--CGGGCCCCCg-- -3'
miRNA:   3'- caCGGCGCCGagagGCCCGGGGGgac -5'
5542 5' -67.5 NC_001806.1 + 21134 0.76 0.078615
Target:  5'- -cGCCcCGGCUCcCCGGGCCCCaCCg- -3'
miRNA:   3'- caCGGcGCCGAGaGGCCCGGGG-GGac -5'
5542 5' -67.5 NC_001806.1 + 21496 0.68 0.28304
Target:  5'- -cGCCGcCGGCga-CCGGGCCCcggCCCg- -3'
miRNA:   3'- caCGGC-GCCGagaGGCCCGGG---GGGac -5'
5542 5' -67.5 NC_001806.1 + 22052 0.76 0.089014
Target:  5'- -aGCCGUGGCcCggcgCCGGGCCCCCg-- -3'
miRNA:   3'- caCGGCGCCGaGa---GGCCCGGGGGgac -5'
5542 5' -67.5 NC_001806.1 + 23105 0.68 0.31536
Target:  5'- -cGCCGgGGC-C-CUGGGCCCCgCgCUGc -3'
miRNA:   3'- caCGGCgCCGaGaGGCCCGGGG-G-GAC- -5'
5542 5' -67.5 NC_001806.1 + 23372 0.66 0.3881
Target:  5'- -cGCCccCGGCUCggacgcCCGcGCCCCCCUc -3'
miRNA:   3'- caCGGc-GCCGAGa-----GGCcCGGGGGGAc -5'
5542 5' -67.5 NC_001806.1 + 23714 0.68 0.28304
Target:  5'- -cGCCgcGCGGUgcgCCGGGCCCgCCCc- -3'
miRNA:   3'- caCGG--CGCCGagaGGCCCGGG-GGGac -5'
5542 5' -67.5 NC_001806.1 + 25841 0.71 0.199015
Target:  5'- cGUGCUcuguugguuucaccuGUGGCagC-CCGGGCCCCCCg- -3'
miRNA:   3'- -CACGG---------------CGCCGa-GaGGCCCGGGGGGac -5'
5542 5' -67.5 NC_001806.1 + 26252 0.73 0.128574
Target:  5'- -gGUgGCGGCgggcagC-CCGGGCCCCCCg- -3'
miRNA:   3'- caCGgCGCCGa-----GaGGCCCGGGGGGac -5'
5542 5' -67.5 NC_001806.1 + 26974 0.71 0.197177
Target:  5'- -cGCCGCGGCUCg-UGGGCCCgCgaGc -3'
miRNA:   3'- caCGGCGCCGAGagGCCCGGGgGgaC- -5'
5542 5' -67.5 NC_001806.1 + 29854 0.74 0.116662
Target:  5'- -gGCCGCGGCUCggaCaGcGCCCCCCUc -3'
miRNA:   3'- caCGGCGCCGAGag-GcC-CGGGGGGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.