miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5542 5' -67.5 NC_001806.1 + 151113 0.7 0.20652
Target:  5'- -gGUCGCGGggggCUCCGGcGCCCCCUc- -3'
miRNA:   3'- caCGGCGCCga--GAGGCC-CGGGGGGac -5'
5542 5' -67.5 NC_001806.1 + 149656 0.66 0.365157
Target:  5'- -cGCC-CGGCUC-CCguguaugaguggGGGUCCCCCa- -3'
miRNA:   3'- caCGGcGCCGAGaGG------------CCCGGGGGGac -5'
5542 5' -67.5 NC_001806.1 + 147283 0.72 0.154717
Target:  5'- -gGCCGCcgaggacgucagggGGgUC-CCGGGCCCaCCCUGg -3'
miRNA:   3'- caCGGCG--------------CCgAGaGGCCCGGG-GGGAC- -5'
5542 5' -67.5 NC_001806.1 + 146839 0.66 0.3881
Target:  5'- gGUGCgGCGGCUCcagCCGGGgaCCgcggCCCg- -3'
miRNA:   3'- -CACGgCGCCGAGa--GGCCCg-GG----GGGac -5'
5542 5' -67.5 NC_001806.1 + 146198 0.66 0.380348
Target:  5'- -gGCCGCGGCUCUgUGGuuaacaccagaGCCUgCCCa- -3'
miRNA:   3'- caCGGCGCCGAGAgGCC-----------CGGG-GGGac -5'
5542 5' -67.5 NC_001806.1 + 144830 0.73 0.138236
Target:  5'- -cGaCCGCGGCggUCCGGGCCCCguCCg- -3'
miRNA:   3'- caC-GGCGCCGagAGGCCCGGGG--GGac -5'
5542 5' -67.5 NC_001806.1 + 144587 1.06 0.000467
Target:  5'- gGUGCCGCGGCUCUCCGGGCCCCCCUGc -3'
miRNA:   3'- -CACGGCGCCGAGAGGCCCGGGGGGAC- -5'
5542 5' -67.5 NC_001806.1 + 143413 0.67 0.322149
Target:  5'- -gGUCGCGGCUCUUacgaGcGGCCCggCCCg- -3'
miRNA:   3'- caCGGCGCCGAGAGg---C-CCGGG--GGGac -5'
5542 5' -67.5 NC_001806.1 + 140940 0.76 0.078615
Target:  5'- -cGCUGUGGCcucccgUUCCGGGCCCCCgUGu -3'
miRNA:   3'- caCGGCGCCGa-----GAGGCCCGGGGGgAC- -5'
5542 5' -67.5 NC_001806.1 + 135866 0.68 0.31536
Target:  5'- -gGCCGgGGCgUCUaucaGGuGCCCCCCg- -3'
miRNA:   3'- caCGGCgCCG-AGAgg--CC-CGGGGGGac -5'
5542 5' -67.5 NC_001806.1 + 135780 0.67 0.336053
Target:  5'- -aGCUGCGGCgC-CCGc-CCCCCCUGg -3'
miRNA:   3'- caCGGCGCCGaGaGGCccGGGGGGAC- -5'
5542 5' -67.5 NC_001806.1 + 135598 0.75 0.09353
Target:  5'- -cGCUGCuGGCgCUCCaGGGCCCCCgCUGu -3'
miRNA:   3'- caCGGCG-CCGaGAGG-CCCGGGGG-GAC- -5'
5542 5' -67.5 NC_001806.1 + 132839 0.69 0.264938
Target:  5'- -cGcCCGCGGC-CgUCGGGCCCgUCUGg -3'
miRNA:   3'- caC-GGCGCCGaGaGGCCCGGGgGGAC- -5'
5542 5' -67.5 NC_001806.1 + 126882 0.73 0.128574
Target:  5'- -cGCCGgGGCUCUCgGGGCCgcaggaCCCa- -3'
miRNA:   3'- caCGGCgCCGAGAGgCCCGGg-----GGGac -5'
5542 5' -67.5 NC_001806.1 + 125869 0.67 0.329047
Target:  5'- -cGCCGUGGCgC-CCcGGCCCCUCa- -3'
miRNA:   3'- caCGGCGCCGaGaGGcCCGGGGGGac -5'
5542 5' -67.5 NC_001806.1 + 125706 0.69 0.259116
Target:  5'- uUGCugCGCGGCg-UCCGcGCCCCUCUGg -3'
miRNA:   3'- cACG--GCGCCGagAGGCcCGGGGGGAC- -5'
5542 5' -67.5 NC_001806.1 + 123754 0.68 0.31536
Target:  5'- ---aCGgGGC-CUCCGGGCgCCCCa- -3'
miRNA:   3'- cacgGCgCCGaGAGGCCCGgGGGGac -5'
5542 5' -67.5 NC_001806.1 + 118748 0.69 0.270865
Target:  5'- -gGCCGCGGgaaUCcCCuGGCCgCCCUGa -3'
miRNA:   3'- caCGGCGCCg--AGaGGcCCGGgGGGAC- -5'
5542 5' -67.5 NC_001806.1 + 116547 0.68 0.288658
Target:  5'- cGUGgCGCGGCUCguggccaggggcaUCCGGGaCCugaaCCCCa- -3'
miRNA:   3'- -CACgGCGCCGAG-------------AGGCCC-GG----GGGGac -5'
5542 5' -67.5 NC_001806.1 + 111660 0.7 0.224303
Target:  5'- aUGCCGCGGCcauggugccgaCCGGGUCCCuCCUu -3'
miRNA:   3'- cACGGCGCCGaga--------GGCCCGGGG-GGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.