Results 41 - 60 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5542 | 5' | -67.5 | NC_001806.1 | + | 73945 | 0.67 | 0.35039 |
Target: 5'- -cGaCGCGGuCUCacagcacgCCGGGCCCCUCg- -3' miRNA: 3'- caCgGCGCC-GAGa-------GGCCCGGGGGGac -5' |
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5542 | 5' | -67.5 | NC_001806.1 | + | 74865 | 0.72 | 0.163415 |
Target: 5'- -gGCCGUccuGGCgaccCUgCGGGCCUCCCUGc -3' miRNA: 3'- caCGGCG---CCGa---GAgGCCCGGGGGGAC- -5' |
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5542 | 5' | -67.5 | NC_001806.1 | + | 76820 | 0.69 | 0.247785 |
Target: 5'- -gGCCaGCGGCgacggC-CCGGGCCUCCUa- -3' miRNA: 3'- caCGG-CGCCGa----GaGGCCCGGGGGGac -5' |
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5542 | 5' | -67.5 | NC_001806.1 | + | 78280 | 0.66 | 0.41197 |
Target: 5'- -cGCCGCGGCaaguUgUCCGaaaccgaCCCCCUGg -3' miRNA: 3'- caCGGCGCCG----AgAGGCccg----GGGGGAC- -5' |
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5542 | 5' | -67.5 | NC_001806.1 | + | 84309 | 0.68 | 0.295003 |
Target: 5'- cGUGCUuacUGGCUggcccugcgcagaCUCCGGGCCUCCgUGg -3' miRNA: 3'- -CACGGc--GCCGA-------------GAGGCCCGGGGGgAC- -5' |
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5542 | 5' | -67.5 | NC_001806.1 | + | 84820 | 0.75 | 0.098262 |
Target: 5'- -cGCCGCGGCUCcggcCCGGGCCCUa--- -3' miRNA: 3'- caCGGCGCCGAGa---GGCCCGGGGggac -5' |
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5542 | 5' | -67.5 | NC_001806.1 | + | 84881 | 0.66 | 0.393588 |
Target: 5'- -gGCCgGCGGgaCUCugggcguggugcguCGGGCCUCCCg- -3' miRNA: 3'- caCGG-CGCCgaGAG--------------GCCCGGGGGGac -5' |
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5542 | 5' | -67.5 | NC_001806.1 | + | 94175 | 0.67 | 0.35039 |
Target: 5'- -cGCUGCGGCgUCgucugaggCCGGGCCUggaggCCCa- -3' miRNA: 3'- caCGGCGCCG-AGa-------GGCCCGGG-----GGGac -5' |
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5542 | 5' | -67.5 | NC_001806.1 | + | 106691 | 0.67 | 0.322149 |
Target: 5'- --cCCgGgGGCUCUucCCGGGCCCCCg-- -3' miRNA: 3'- cacGG-CgCCGAGA--GGCCCGGGGGgac -5' |
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5542 | 5' | -67.5 | NC_001806.1 | + | 111660 | 0.7 | 0.224303 |
Target: 5'- aUGCCGCGGCcauggugccgaCCGGGUCCCuCCUu -3' miRNA: 3'- cACGGCGCCGaga--------GGCCCGGGG-GGAc -5' |
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5542 | 5' | -67.5 | NC_001806.1 | + | 116547 | 0.68 | 0.288658 |
Target: 5'- cGUGgCGCGGCUCguggccaggggcaUCCGGGaCCugaaCCCCa- -3' miRNA: 3'- -CACgGCGCCGAG-------------AGGCCC-GG----GGGGac -5' |
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5542 | 5' | -67.5 | NC_001806.1 | + | 118748 | 0.69 | 0.270865 |
Target: 5'- -gGCCGCGGgaaUCcCCuGGCCgCCCUGa -3' miRNA: 3'- caCGGCGCCg--AGaGGcCCGGgGGGAC- -5' |
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5542 | 5' | -67.5 | NC_001806.1 | + | 123754 | 0.68 | 0.31536 |
Target: 5'- ---aCGgGGC-CUCCGGGCgCCCCa- -3' miRNA: 3'- cacgGCgCCGaGAGGCCCGgGGGGac -5' |
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5542 | 5' | -67.5 | NC_001806.1 | + | 125706 | 0.69 | 0.259116 |
Target: 5'- uUGCugCGCGGCg-UCCGcGCCCCUCUGg -3' miRNA: 3'- cACG--GCGCCGagAGGCcCGGGGGGAC- -5' |
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5542 | 5' | -67.5 | NC_001806.1 | + | 125869 | 0.67 | 0.329047 |
Target: 5'- -cGCCGUGGCgC-CCcGGCCCCUCa- -3' miRNA: 3'- caCGGCGCCGaGaGGcCCGGGGGGac -5' |
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5542 | 5' | -67.5 | NC_001806.1 | + | 126882 | 0.73 | 0.128574 |
Target: 5'- -cGCCGgGGCUCUCgGGGCCgcaggaCCCa- -3' miRNA: 3'- caCGGCgCCGAGAGgCCCGGg-----GGGac -5' |
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5542 | 5' | -67.5 | NC_001806.1 | + | 132839 | 0.69 | 0.264938 |
Target: 5'- -cGcCCGCGGC-CgUCGGGCCCgUCUGg -3' miRNA: 3'- caC-GGCGCCGaGaGGCCCGGGgGGAC- -5' |
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5542 | 5' | -67.5 | NC_001806.1 | + | 135598 | 0.75 | 0.09353 |
Target: 5'- -cGCUGCuGGCgCUCCaGGGCCCCCgCUGu -3' miRNA: 3'- caCGGCG-CCGaGAGG-CCCGGGGG-GAC- -5' |
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5542 | 5' | -67.5 | NC_001806.1 | + | 135780 | 0.67 | 0.336053 |
Target: 5'- -aGCUGCGGCgC-CCGc-CCCCCCUGg -3' miRNA: 3'- caCGGCGCCGaGaGGCccGGGGGGAC- -5' |
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5542 | 5' | -67.5 | NC_001806.1 | + | 135866 | 0.68 | 0.31536 |
Target: 5'- -gGCCGgGGCgUCUaucaGGuGCCCCCCg- -3' miRNA: 3'- caCGGCgCCG-AGAgg--CC-CGGGGGGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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