miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5543 3' -54.2 NC_001806.1 + 25097 0.78 0.396221
Target:  5'- aGGGGcgGGAgggggcgaGGGGCGGGAGGgggcgaggggcgGGAGGg -3'
miRNA:   3'- -CCCCuaCCU--------UCCUGCCCUUCa-----------CCUUC- -5'
5543 3' -54.2 NC_001806.1 + 25148 0.78 0.396221
Target:  5'- aGGGGcgGGAgggggcgaGGGGCGGGAGGgggcgaggggcgGGAGGg -3'
miRNA:   3'- -CCCCuaCCU--------UCCUGCCCUUCa-----------CCUUC- -5'
5543 3' -54.2 NC_001806.1 + 25199 0.78 0.396221
Target:  5'- aGGGGcgGGAgggggcgaGGGGCGGGAGGgggcgaggggcgGGAGGg -3'
miRNA:   3'- -CCCCuaCCU--------UCCUGCCCUUCa-----------CCUUC- -5'
5543 3' -54.2 NC_001806.1 + 25250 0.78 0.396221
Target:  5'- aGGGGcgGGAgggggcgaGGGGCGGGAGGgggcgaggggcgGGAGGg -3'
miRNA:   3'- -CCCCuaCCU--------UCCUGCCCUUCa-----------CCUUC- -5'
5543 3' -54.2 NC_001806.1 + 25301 0.78 0.396221
Target:  5'- aGGGGcgGGAgggggcgaGGGGCGGGAGGgggcgaggggcgGGAGGg -3'
miRNA:   3'- -CCCCuaCCU--------UCCUGCCCUUCa-----------CCUUC- -5'
5543 3' -54.2 NC_001806.1 + 25352 0.78 0.396221
Target:  5'- aGGGGcgGGAgggggcgaGGGGCGGGAGGgggcgaggggcgGGAGGg -3'
miRNA:   3'- -CCCCuaCCU--------UCCUGCCCUUCa-----------CCUUC- -5'
5543 3' -54.2 NC_001806.1 + 25396 0.73 0.690438
Target:  5'- nGGGGc--GAGGGGCGGGAGGggGcGAGGg -3'
miRNA:   3'- -CCCCuacCUUCCUGCCCUUCa-C-CUUC- -5'
5543 3' -54.2 NC_001806.1 + 25540 0.73 0.690438
Target:  5'- uGGGGccgGGGAGGGCuGGGGccGG-GGAGGg -3'
miRNA:   3'- -CCCCua-CCUUCCUG-CCCU--UCaCCUUC- -5'
5543 3' -54.2 NC_001806.1 + 25572 0.73 0.690438
Target:  5'- uGGGGccgGGGAGGGCuGGGGccGG-GGAGGg -3'
miRNA:   3'- -CCCCua-CCUUCCUG-CCCU--UCaCCUUC- -5'
5543 3' -54.2 NC_001806.1 + 25604 0.73 0.690438
Target:  5'- uGGGGccgGGGAGGGCuGGGGccGG-GGAGGg -3'
miRNA:   3'- -CCCCua-CCUUCCUG-CCCU--UCaCCUUC- -5'
5543 3' -54.2 NC_001806.1 + 25636 0.73 0.690438
Target:  5'- uGGGGcugGGGAGGGCuGGGGcuGG-GGAGGg -3'
miRNA:   3'- -CCCCua-CCUUCCUG-CCCU--UCaCCUUC- -5'
5543 3' -54.2 NC_001806.1 + 25701 0.69 0.848172
Target:  5'- cGGGGuacgucUGGAGGaGCGGGAGGUGcGcGGu -3'
miRNA:   3'- -CCCCu-----ACCUUCcUGCCCUUCAC-CuUC- -5'
5543 3' -54.2 NC_001806.1 + 25969 0.76 0.527674
Target:  5'- gGGGGAggagcgggGGGAGGAgCGGGggGaGGAGc -3'
miRNA:   3'- -CCCCUa-------CCUUCCU-GCCCuuCaCCUUc -5'
5543 3' -54.2 NC_001806.1 + 26005 0.76 0.527674
Target:  5'- gGGGGAggagcgggGGGAGGAgCGGGggGaGGAGc -3'
miRNA:   3'- -CCCCUa-------CCUUCCU-GCCCuuCaCCUUc -5'
5543 3' -54.2 NC_001806.1 + 26041 0.76 0.527674
Target:  5'- gGGGGAggagcgggGGGAGGAgCGGGggGaGGAGc -3'
miRNA:   3'- -CCCCUa-------CCUUCCU-GCCCuuCaCCUUc -5'
5543 3' -54.2 NC_001806.1 + 26077 0.76 0.527674
Target:  5'- gGGGGAggagcgggGGGAGGAgCGGGggGaGGAGc -3'
miRNA:   3'- -CCCCUa-------CCUUCCU-GCCCuuCaCCUUc -5'
5543 3' -54.2 NC_001806.1 + 26113 0.76 0.527674
Target:  5'- gGGGGAggagcgggGGGAGGAgCGGGggGaGGAGc -3'
miRNA:   3'- -CCCCUa-------CCUUCCU-GCCCuuCaCCUUc -5'
5543 3' -54.2 NC_001806.1 + 26149 0.76 0.527674
Target:  5'- gGGGGAggagcgggGGGAGGAgCGGGggGaGGAGc -3'
miRNA:   3'- -CCCCUa-------CCUUCCU-GCCCuuCaCCUUc -5'
5543 3' -54.2 NC_001806.1 + 27828 0.66 0.951696
Target:  5'- uGGGGGcgccggguUGGuccccGGGGACGGGGccgccccgcGGUGGGc- -3'
miRNA:   3'- -CCCCU--------ACC-----UUCCUGCCCU---------UCACCUuc -5'
5543 3' -54.2 NC_001806.1 + 28668 0.67 0.930399
Target:  5'- gGGGGGUgGGGAGGAgccgcccgccauauuUGGGGGacgccGUGGGAc -3'
miRNA:   3'- -CCCCUA-CCUUCCU---------------GCCCUU-----CACCUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.