miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5543 3' -54.2 NC_001806.1 + 2835 0.77 0.451143
Target:  5'- gGGGGcGUGGAGGGgggcgcgggcGCGGGGAG-GGggGc -3'
miRNA:   3'- -CCCC-UACCUUCC----------UGCCCUUCaCCuuC- -5'
5543 3' -54.2 NC_001806.1 + 4425 0.67 0.922911
Target:  5'- gGGGGGUGGcccGGGCGGGGGcggcGUccgcccGGggGc -3'
miRNA:   3'- -CCCCUACCuu-CCUGCCCUU----CA------CCuuC- -5'
5543 3' -54.2 NC_001806.1 + 6079 0.67 0.928307
Target:  5'- gGGGGcgGGcccGGGcGGCGGGggGcGGGu- -3'
miRNA:   3'- -CCCCuaCC---UUC-CUGCCCuuCaCCUuc -5'
5543 3' -54.2 NC_001806.1 + 6414 0.86 0.141617
Target:  5'- cGGaGGAgGGggGGACGcGGggGUGGAGGa -3'
miRNA:   3'- -CC-CCUaCCuuCCUGC-CCuuCACCUUC- -5'
5543 3' -54.2 NC_001806.1 + 6459 0.76 0.488707
Target:  5'- cGGaGGA-GGggGGACGcGGggGcGGAGGa -3'
miRNA:   3'- -CC-CCUaCCuuCCUGC-CCuuCaCCUUC- -5'
5543 3' -54.2 NC_001806.1 + 6503 0.76 0.488707
Target:  5'- cGGaGGA-GGggGGACGcGGggGcGGAGGa -3'
miRNA:   3'- -CC-CCUaCCuuCCUGC-CCuuCaCCUUC- -5'
5543 3' -54.2 NC_001806.1 + 6547 0.76 0.488707
Target:  5'- cGGaGGA-GGggGGACGcGGggGcGGAGGa -3'
miRNA:   3'- -CC-CCUaCCuuCCUGC-CCuuCaCCUUC- -5'
5543 3' -54.2 NC_001806.1 + 9772 0.66 0.951696
Target:  5'- uGGGGGcgcgugGGGAGGggccccgacguGCGGGuGGGUGGGc- -3'
miRNA:   3'- -CCCCUa-----CCUUCC-----------UGCCC-UUCACCUuc -5'
5543 3' -54.2 NC_001806.1 + 10392 0.78 0.397925
Target:  5'- gGGGGcgGGggGaGGCGGGAGccGGggGg -3'
miRNA:   3'- -CCCCuaCCuuC-CUGCCCUUcaCCuuC- -5'
5543 3' -54.2 NC_001806.1 + 11315 0.68 0.916697
Target:  5'- uGGGGUGGGugucgugGGGuccACGGGggGcgucGGAAGc -3'
miRNA:   3'- cCCCUACCU-------UCC---UGCCCuuCa---CCUUC- -5'
5543 3' -54.2 NC_001806.1 + 11749 0.66 0.953313
Target:  5'- uGGGGAaGGGcguggucgaugcuugGGGAgCGGGGauGGUGGucGAGg -3'
miRNA:   3'- -CCCCUaCCU---------------UCCU-GCCCU--UCACC--UUC- -5'
5543 3' -54.2 NC_001806.1 + 11800 0.82 0.258051
Target:  5'- cGGGGAUGGu-GGuCGaGGggGUGGAGGu -3'
miRNA:   3'- -CCCCUACCuuCCuGC-CCuuCACCUUC- -5'
5543 3' -54.2 NC_001806.1 + 11836 0.7 0.831803
Target:  5'- aGGGGGUGGAggccugguuaGGGGCGGGu--UGGu-- -3'
miRNA:   3'- -CCCCUACCU----------UCCUGCCCuucACCuuc -5'
5543 3' -54.2 NC_001806.1 + 15114 0.7 0.840083
Target:  5'- gGGGGAUGGGAcuACGGGAcGGUuGGGu- -3'
miRNA:   3'- -CCCCUACCUUccUGCCCU-UCA-CCUuc -5'
5543 3' -54.2 NC_001806.1 + 15289 0.67 0.932958
Target:  5'- gGGGGuguGUGGucGGGCGugguaaggcugauGGcGGUGGGAGa -3'
miRNA:   3'- -CCCC---UACCuuCCUGC-------------CCuUCACCUUC- -5'
5543 3' -54.2 NC_001806.1 + 15403 0.68 0.892346
Target:  5'- uGGGuGGUGGAGGaGACGuu-GGUGGGAa -3'
miRNA:   3'- -CCC-CUACCUUC-CUGCccuUCACCUUc -5'
5543 3' -54.2 NC_001806.1 + 20713 0.71 0.78782
Target:  5'- cGGGGUGGGcccgccgggGGGGCGGGggGccGGcGGc -3'
miRNA:   3'- cCCCUACCU---------UCCUGCCCuuCa-CCuUC- -5'
5543 3' -54.2 NC_001806.1 + 21197 0.66 0.955668
Target:  5'- cGGGGGgcccucgGGuGGGGCGcGGAgacGGaGGAGGg -3'
miRNA:   3'- -CCCCUa------CCuUCCUGC-CCU---UCaCCUUC- -5'
5543 3' -54.2 NC_001806.1 + 24879 0.67 0.933463
Target:  5'- cGGGGGccgUGGAGGuGCuGGggGcGGAGGc -3'
miRNA:   3'- -CCCCU---ACCUUCcUGcCCuuCaCCUUC- -5'
5543 3' -54.2 NC_001806.1 + 24987 0.66 0.953313
Target:  5'- gGGGGAcGGGgugcuguaacgggccGGGACGGGgcG-GGGc- -3'
miRNA:   3'- -CCCCUaCCU---------------UCCUGCCCuuCaCCUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.