miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5543 3' -54.2 NC_001806.1 + 151288 0.66 0.951696
Target:  5'- cGGGGccGGggGG-CGGcGGcGGUGGGc- -3'
miRNA:   3'- -CCCCuaCCuuCCuGCC-CU-UCACCUuc -5'
5543 3' -54.2 NC_001806.1 + 151234 0.73 0.682314
Target:  5'- gGGGGGUGGGAGGGgucagccccgcccccCGGGcccacgccgggcGGUGGggGc -3'
miRNA:   3'- -CCCCUACCUUCCU---------------GCCCu-----------UCACCuuC- -5'
5543 3' -54.2 NC_001806.1 + 151091 0.67 0.922911
Target:  5'- cGGGGGUcGcGggGGuCGcGGggGUcgcGGggGg -3'
miRNA:   3'- -CCCCUA-C-CuuCCuGC-CCuuCA---CCuuC- -5'
5543 3' -54.2 NC_001806.1 + 149034 0.72 0.700548
Target:  5'- aGGGGAaaaaaGggGGGCGGGuAAGaaUGGggGg -3'
miRNA:   3'- -CCCCUac---CuuCCUGCCC-UUC--ACCuuC- -5'
5543 3' -54.2 NC_001806.1 + 147782 0.71 0.796934
Target:  5'- cGGGGGgcccGGGGCGGGggGcGGAGc -3'
miRNA:   3'- -CCCCUaccuUCCUGCCCuuCaCCUUc -5'
5543 3' -54.2 NC_001806.1 + 147684 0.66 0.962933
Target:  5'- cGGGGGccgGGGcgcgGGGGCGGGccccGGAGGc -3'
miRNA:   3'- -CCCCUa--CCU----UCCUGCCCuucaCCUUC- -5'
5543 3' -54.2 NC_001806.1 + 145681 0.77 0.442001
Target:  5'- cGGGGGUGgGAAGGGuCGGGgGAG-GGggGa -3'
miRNA:   3'- -CCCCUAC-CUUCCU-GCCC-UUCaCCuuC- -5'
5543 3' -54.2 NC_001806.1 + 145552 0.8 0.304351
Target:  5'- gGGGGAgugcggGGGAGGGgGGGu-GUGGAAGg -3'
miRNA:   3'- -CCCCUa-----CCUUCCUgCCCuuCACCUUC- -5'
5543 3' -54.2 NC_001806.1 + 144073 1.1 0.003821
Target:  5'- gGGGGAUGGAAGGACGGGAAGUGGAAGu -3'
miRNA:   3'- -CCCCUACCUUCCUGCCCUUCACCUUC- -5'
5543 3' -54.2 NC_001806.1 + 143805 0.75 0.547591
Target:  5'- aGGGGAcGGAGGGAgGGGGugacGGggGa -3'
miRNA:   3'- -CCCCUaCCUUCCUgCCCUuca-CCuuC- -5'
5543 3' -54.2 NC_001806.1 + 143330 0.68 0.892346
Target:  5'- aGGGGggGGggGGGCGcuGGuuGGUcaaaaaagGGAGGg -3'
miRNA:   3'- -CCCCuaCCuuCCUGC--CCu-UCA--------CCUUC- -5'
5543 3' -54.2 NC_001806.1 + 143256 0.73 0.63933
Target:  5'- uGGGGggGGAuguGGGCGGG-GGUgcgcGGGAGg -3'
miRNA:   3'- -CCCCuaCCUu--CCUGCCCuUCA----CCUUC- -5'
5543 3' -54.2 NC_001806.1 + 133823 0.69 0.863752
Target:  5'- cGGGGugcuggcgGGAguauGGGGCGaGGggG-GGAAGu -3'
miRNA:   3'- -CCCCua------CCU----UCCUGC-CCuuCaCCUUC- -5'
5543 3' -54.2 NC_001806.1 + 129709 0.67 0.943054
Target:  5'- cGGaGGcccGGggGGccacguucuuUGGGGAGUGGAAGc -3'
miRNA:   3'- -CC-CCua-CCuuCCu---------GCCCUUCACCUUC- -5'
5543 3' -54.2 NC_001806.1 + 127406 0.73 0.63933
Target:  5'- gGGGGggGGggGGACGGuGAuAGUaacGGGAu -3'
miRNA:   3'- -CCCCuaCCuuCCUGCC-CU-UCA---CCUUc -5'
5543 3' -54.2 NC_001806.1 + 120319 0.67 0.938378
Target:  5'- ----cUGGggGGACGGGGcGGUcGGggGc -3'
miRNA:   3'- ccccuACCuuCCUGCCCU-UCA-CCuuC- -5'
5543 3' -54.2 NC_001806.1 + 117069 0.66 0.962933
Target:  5'- gGGGGGUGG-GGGugGGcauccaGGGAGa -3'
miRNA:   3'- -CCCCUACCuUCCugCCcuuca-CCUUC- -5'
5543 3' -54.2 NC_001806.1 + 113272 0.66 0.955668
Target:  5'- uGGGGGUGGccgacguGGAgcugcCGGGggG-GGAc- -3'
miRNA:   3'- -CCCCUACCuu-----CCU-----GCCCuuCaCCUuc -5'
5543 3' -54.2 NC_001806.1 + 111332 0.75 0.577885
Target:  5'- cGGGGGU---GGGGCGGGggG-GGggGu -3'
miRNA:   3'- -CCCCUAccuUCCUGCCCuuCaCCuuC- -5'
5543 3' -54.2 NC_001806.1 + 103421 0.68 0.911397
Target:  5'- uGGGGAcaagaUGGggGGugGGauGAGG-GGGc- -3'
miRNA:   3'- -CCCCU-----ACCuuCCugCC--CUUCaCCUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.