miRNA display CGI


Results 41 - 60 of 114 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5543 3' -54.2 NC_001806.1 + 25701 0.69 0.848172
Target:  5'- cGGGGuacgucUGGAGGaGCGGGAGGUGcGcGGu -3'
miRNA:   3'- -CCCCu-----ACCUUCcUGCCCUUCAC-CuUC- -5'
5543 3' -54.2 NC_001806.1 + 15114 0.7 0.840083
Target:  5'- gGGGGAUGGGAcuACGGGAcGGUuGGGu- -3'
miRNA:   3'- -CCCCUACCUUccUGCCCU-UCA-CCUuc -5'
5543 3' -54.2 NC_001806.1 + 81616 0.7 0.840083
Target:  5'- cGGGAccGGAGGuCGGGAAGcgauaUGGggGu -3'
miRNA:   3'- cCCCUacCUUCCuGCCCUUC-----ACCuuC- -5'
5543 3' -54.2 NC_001806.1 + 11836 0.7 0.831803
Target:  5'- aGGGGGUGGAggccugguuaGGGGCGGGu--UGGu-- -3'
miRNA:   3'- -CCCCUACCU----------UCCUGCCCuucACCuuc -5'
5543 3' -54.2 NC_001806.1 + 28837 0.7 0.830965
Target:  5'- aGGGGGgcaGGAcuuugugAGG-CGGGggG-GGGAGa -3'
miRNA:   3'- -CCCCUa--CCU-------UCCuGCCCuuCaCCUUC- -5'
5543 3' -54.2 NC_001806.1 + 35040 0.7 0.814702
Target:  5'- nGGGAgagGGGAGaGGgGGGGAGagGGGAGc -3'
miRNA:   3'- cCCCUa--CCUUC-CUgCCCUUCa-CCUUC- -5'
5543 3' -54.2 NC_001806.1 + 33622 0.7 0.809439
Target:  5'- cGGGGcgGGGGgccggauacccacacGGGCGGGggG-GGGGu -3'
miRNA:   3'- -CCCCuaCCUU---------------CCUGCCCuuCaCCUUc -5'
5543 3' -54.2 NC_001806.1 + 147782 0.71 0.796934
Target:  5'- cGGGGGgcccGGGGCGGGggGcGGAGc -3'
miRNA:   3'- -CCCCUaccuUCCUGCCCuuCaCCUUc -5'
5543 3' -54.2 NC_001806.1 + 20713 0.71 0.78782
Target:  5'- cGGGGUGGGcccgccgggGGGGCGGGggGccGGcGGc -3'
miRNA:   3'- cCCCUACCU---------UCCUGCCCuuCa-CCuUC- -5'
5543 3' -54.2 NC_001806.1 + 42323 0.71 0.769179
Target:  5'- cGGGGcgGGggGcGugGGGAaucgcguaGGUGGc-- -3'
miRNA:   3'- -CCCCuaCCuuC-CugCCCU--------UCACCuuc -5'
5543 3' -54.2 NC_001806.1 + 31369 0.71 0.769179
Target:  5'- uGGGGAggGGggGGuCGGGcgcuGGGUGGu-- -3'
miRNA:   3'- -CCCCUa-CCuuCCuGCCC----UUCACCuuc -5'
5543 3' -54.2 NC_001806.1 + 31957 0.72 0.700548
Target:  5'- aGGGGUGGcGGGGCGGGAcG-GGGc- -3'
miRNA:   3'- cCCCUACCuUCCUGCCCUuCaCCUuc -5'
5543 3' -54.2 NC_001806.1 + 29126 0.72 0.700548
Target:  5'- -uGGAUGGggGGGCGGucucGggG-GGGAGc -3'
miRNA:   3'- ccCCUACCuuCCUGCC----CuuCaCCUUC- -5'
5543 3' -54.2 NC_001806.1 + 149034 0.72 0.700548
Target:  5'- aGGGGAaaaaaGggGGGCGGGuAAGaaUGGggGg -3'
miRNA:   3'- -CCCCUac---CuuCCUGCCC-UUC--ACCuuC- -5'
5543 3' -54.2 NC_001806.1 + 25396 0.73 0.690438
Target:  5'- nGGGGc--GAGGGGCGGGAGGggGcGAGGg -3'
miRNA:   3'- -CCCCuacCUUCCUGCCCUUCa-C-CUUC- -5'
5543 3' -54.2 NC_001806.1 + 25540 0.73 0.690438
Target:  5'- uGGGGccgGGGAGGGCuGGGGccGG-GGAGGg -3'
miRNA:   3'- -CCCCua-CCUUCCUG-CCCU--UCaCCUUC- -5'
5543 3' -54.2 NC_001806.1 + 25572 0.73 0.690438
Target:  5'- uGGGGccgGGGAGGGCuGGGGccGG-GGAGGg -3'
miRNA:   3'- -CCCCua-CCUUCCUG-CCCU--UCaCCUUC- -5'
5543 3' -54.2 NC_001806.1 + 25604 0.73 0.690438
Target:  5'- uGGGGccgGGGAGGGCuGGGGccGG-GGAGGg -3'
miRNA:   3'- -CCCCua-CCUUCCUG-CCCU--UCaCCUUC- -5'
5543 3' -54.2 NC_001806.1 + 25636 0.73 0.690438
Target:  5'- uGGGGcugGGGAGGGCuGGGGcuGG-GGAGGg -3'
miRNA:   3'- -CCCCua-CCUUCCUG-CCCU--UCaCCUUC- -5'
5543 3' -54.2 NC_001806.1 + 151234 0.73 0.682314
Target:  5'- gGGGGGUGGGAGGGgucagccccgcccccCGGGcccacgccgggcGGUGGggGc -3'
miRNA:   3'- -CCCCUACCUUCCU---------------GCCCu-----------UCACCuuC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.