miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5543 5' -59.6 NC_001806.1 + 50423 0.67 0.663796
Target:  5'- -gCCUGCACCCgCaCgUGCa--CCACCCc -3'
miRNA:   3'- uaGGAUGUGGG-G-GgACGgaaGGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 50812 0.72 0.397514
Target:  5'- -aCgUACACCCCCCUGCgCUacgcgugcguccUCCgagcgACCCa -3'
miRNA:   3'- uaGgAUGUGGGGGGACG-GA------------AGG-----UGGG- -5'
5543 5' -59.6 NC_001806.1 + 50923 0.66 0.761421
Target:  5'- -aUCUGCGCCCCgCCU-CCUcagCGCCCc -3'
miRNA:   3'- uaGGAUGUGGGG-GGAcGGAag-GUGGG- -5'
5543 5' -59.6 NC_001806.1 + 52681 0.72 0.405922
Target:  5'- -gCCUACACUcgaCCCCcGCg-UCCACCCg -3'
miRNA:   3'- uaGGAUGUGG---GGGGaCGgaAGGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 53244 0.67 0.691744
Target:  5'- -cCCUAUuuuCCCCCCcggGCCgcaccgggcccCCGCCCc -3'
miRNA:   3'- uaGGAUGu--GGGGGGa--CGGaa---------GGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 57885 0.69 0.553693
Target:  5'- cAUCCU-CGCCCCCCgagcGCCc-CCGCUUg -3'
miRNA:   3'- -UAGGAuGUGGGGGGa---CGGaaGGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 60019 0.67 0.703617
Target:  5'- gGUCCggaGCCgCgCUGCCgUCCGCCg -3'
miRNA:   3'- -UAGGaugUGGgGgGACGGaAGGUGGg -5'
5543 5' -59.6 NC_001806.1 + 60474 0.68 0.603475
Target:  5'- -aCC-AgGCCCCCuCUGCCgccggCCGCCg -3'
miRNA:   3'- uaGGaUgUGGGGG-GACGGaa---GGUGGg -5'
5543 5' -59.6 NC_001806.1 + 68756 0.67 0.673809
Target:  5'- -aCCUuacCACCCCggcguacagCCUGCuCUUCCccGCCCc -3'
miRNA:   3'- uaGGAu--GUGGGG---------GGACG-GAAGG--UGGG- -5'
5543 5' -59.6 NC_001806.1 + 72149 0.66 0.761421
Target:  5'- -cCCUGCG-CCCCCUGUCguacaCGCUCc -3'
miRNA:   3'- uaGGAUGUgGGGGGACGGaag--GUGGG- -5'
5543 5' -59.6 NC_001806.1 + 72753 0.68 0.593451
Target:  5'- cUCCgccgaccCACCCUCC-GCCgacCCACCCu -3'
miRNA:   3'- uAGGau-----GUGGGGGGaCGGaa-GGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 72998 0.69 0.544849
Target:  5'- cUCg-GC-CCCCCCUGCCaaaaccaagaagaaaUCCACCCc -3'
miRNA:   3'- uAGgaUGuGGGGGGACGGa--------------AGGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 73088 0.76 0.230528
Target:  5'- uGUCCUcgccucgGCACCCCCCgacccgGCCgggCCGCCg -3'
miRNA:   3'- -UAGGA-------UGUGGGGGGa-----CGGaa-GGUGGg -5'
5543 5' -59.6 NC_001806.1 + 73472 0.66 0.752013
Target:  5'- -cCCggcCGCCgCCCUGCUggagUUUACCCu -3'
miRNA:   3'- uaGGau-GUGGgGGGACGGa---AGGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 74821 0.69 0.551724
Target:  5'- gGUCCUGCGCCCCCucccugaCUuugugggcuaaagGCCUgUCCGgCCg -3'
miRNA:   3'- -UAGGAUGUGGGGG-------GA-------------CGGA-AGGUgGG- -5'
5543 5' -59.6 NC_001806.1 + 74879 0.66 0.713448
Target:  5'- -cCCUGCggGCCUCCCUGCCggCgGgCUg -3'
miRNA:   3'- uaGGAUG--UGGGGGGACGGaaGgUgGG- -5'
5543 5' -59.6 NC_001806.1 + 75285 0.67 0.683789
Target:  5'- -cCCgGCcuCCCCCCUgGCCUUCCuagcgGCCa -3'
miRNA:   3'- uaGGaUGu-GGGGGGA-CGGAAGG-----UGGg -5'
5543 5' -59.6 NC_001806.1 + 75914 0.66 0.732899
Target:  5'- -cCCaUACACCCCCgaGaaCCagcgCCACCCc -3'
miRNA:   3'- uaGG-AUGUGGGGGgaC--GGaa--GGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 79406 0.68 0.623577
Target:  5'- -cCCcGCGCCCCuCCuUGCCccggacccccUUUCGCCCa -3'
miRNA:   3'- uaGGaUGUGGGG-GG-ACGG----------AAGGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 79601 0.76 0.225608
Target:  5'- uUCCccgGCGCCCCCCgaUGCCa-CCGCCCc -3'
miRNA:   3'- uAGGa--UGUGGGGGG--ACGGaaGGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.