miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5543 5' -59.6 NC_001806.1 + 23408 0.69 0.552709
Target:  5'- -gCCcGCGCCCCCCUccacgcccccgggGCCcgagcCCGCCCc -3'
miRNA:   3'- uaGGaUGUGGGGGGA-------------CGGaa---GGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 23814 0.67 0.703617
Target:  5'- cUCUUugGCCCCCUgcgcGCCUcggGCCCg -3'
miRNA:   3'- uAGGAugUGGGGGGa---CGGAaggUGGG- -5'
5543 5' -59.6 NC_001806.1 + 24775 0.66 0.755789
Target:  5'- gGUgCUGCgcggcgacgacgacgGCCCgggggCCCUGCCgccggcgCCGCCCg -3'
miRNA:   3'- -UAgGAUG---------------UGGG-----GGGACGGaa-----GGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 26518 0.66 0.732899
Target:  5'- -gCCgcCGCCCCCC-GCCggugggCC-CCCg -3'
miRNA:   3'- uaGGauGUGGGGGGaCGGaa----GGuGGG- -5'
5543 5' -59.6 NC_001806.1 + 26669 0.7 0.476993
Target:  5'- -gCCgcCGCCCCCCggccccgGCCcccaCCGCCCg -3'
miRNA:   3'- uaGGauGUGGGGGGa------CGGaa--GGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 26731 0.75 0.278961
Target:  5'- cUCCcAC-CCCCCCUcgcgccccuuccGCCUUCCGCCg -3'
miRNA:   3'- uAGGaUGuGGGGGGA------------CGGAAGGUGGg -5'
5543 5' -59.6 NC_001806.1 + 28916 0.69 0.56357
Target:  5'- uUCUUACccGCCCCCCUuuUUUCCccuaGCCCg -3'
miRNA:   3'- uAGGAUG--UGGGGGGAcgGAAGG----UGGG- -5'
5543 5' -59.6 NC_001806.1 + 29758 0.68 0.593451
Target:  5'- -aCCgccCGCCCCCC-GCCggaCGCCCc -3'
miRNA:   3'- uaGGau-GUGGGGGGaCGGaagGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 30134 0.66 0.713448
Target:  5'- cUCCccacAgGCCCCCCgcggcgcccaUGCCaggcUCCGCCCc -3'
miRNA:   3'- uAGGa---UgUGGGGGG----------ACGGa---AGGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 30468 0.66 0.732899
Target:  5'- cUCCgGCGCCgCCCCgcucCCcUCCGCCg -3'
miRNA:   3'- uAGGaUGUGG-GGGGac--GGaAGGUGGg -5'
5543 5' -59.6 NC_001806.1 + 30664 0.66 0.731934
Target:  5'- -cCCgGgACCCCCCUgacguccucggcgGCCU-CCGCCUc -3'
miRNA:   3'- uaGGaUgUGGGGGGA-------------CGGAaGGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 32536 0.68 0.643704
Target:  5'- -aCCgGCcgACCCCCUggcgGUCUUCCAgCCg -3'
miRNA:   3'- uaGGaUG--UGGGGGGa---CGGAAGGUgGG- -5'
5543 5' -59.6 NC_001806.1 + 34626 0.66 0.742503
Target:  5'- -aCCaGCGCCCCCCcccCCUcaCCACCa -3'
miRNA:   3'- uaGGaUGUGGGGGGac-GGAa-GGUGGg -5'
5543 5' -59.6 NC_001806.1 + 34679 0.66 0.732899
Target:  5'- -aCCgACACCUCCCgcGCacccCCGCCCa -3'
miRNA:   3'- uaGGaUGUGGGGGGa-CGgaa-GGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 38689 0.7 0.495716
Target:  5'- cUCCUcguucCGCCCCCCgggcgggGCCc-CCGCCCc -3'
miRNA:   3'- uAGGAu----GUGGGGGGa------CGGaaGGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 43756 0.66 0.752013
Target:  5'- cUCCUugggGCACCCCCacacGCCg-CC-CCCg -3'
miRNA:   3'- uAGGA----UGUGGGGGga--CGGaaGGuGGG- -5'
5543 5' -59.6 NC_001806.1 + 45753 0.77 0.199875
Target:  5'- -aCCUGCACCaCCCCcGCCgUCCgaACCCa -3'
miRNA:   3'- uaGGAUGUGG-GGGGaCGGaAGG--UGGG- -5'
5543 5' -59.6 NC_001806.1 + 45927 0.69 0.573492
Target:  5'- aGUCCgccugACACCUCCC-GCCguggCGCCCu -3'
miRNA:   3'- -UAGGa----UGUGGGGGGaCGGaag-GUGGG- -5'
5543 5' -59.6 NC_001806.1 + 48621 0.66 0.713448
Target:  5'- -aCCcGCAUCCCCCgucuggGUUUUCCccuCCCg -3'
miRNA:   3'- uaGGaUGUGGGGGGa-----CGGAAGGu--GGG- -5'
5543 5' -59.6 NC_001806.1 + 49000 0.74 0.312716
Target:  5'- gGUCCggcgGCACCuaCCCCgGCCU-CCAUCCg -3'
miRNA:   3'- -UAGGa---UGUGG--GGGGaCGGAaGGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.