Results 21 - 40 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5543 | 5' | -59.6 | NC_001806.1 | + | 30134 | 0.66 | 0.713448 |
Target: 5'- cUCCccacAgGCCCCCCgcggcgcccaUGCCaggcUCCGCCCc -3' miRNA: 3'- uAGGa---UgUGGGGGG----------ACGGa---AGGUGGG- -5' |
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5543 | 5' | -59.6 | NC_001806.1 | + | 75914 | 0.66 | 0.732899 |
Target: 5'- -cCCaUACACCCCCgaGaaCCagcgCCACCCc -3' miRNA: 3'- uaGG-AUGUGGGGGgaC--GGaa--GGUGGG- -5' |
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5543 | 5' | -59.6 | NC_001806.1 | + | 26518 | 0.66 | 0.732899 |
Target: 5'- -gCCgcCGCCCCCC-GCCggugggCC-CCCg -3' miRNA: 3'- uaGGauGUGGGGGGaCGGaa----GGuGGG- -5' |
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5543 | 5' | -59.6 | NC_001806.1 | + | 5023 | 0.66 | 0.742503 |
Target: 5'- cGUCCc-CGCCCUCCUccgucuccgcGCC--CCACCCg -3' miRNA: 3'- -UAGGauGUGGGGGGA----------CGGaaGGUGGG- -5' |
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5543 | 5' | -59.6 | NC_001806.1 | + | 135802 | 0.66 | 0.713448 |
Target: 5'- gGUCCUG-GCCCgcagaCCCgcgGCUguUUCCGCCCu -3' miRNA: 3'- -UAGGAUgUGGG-----GGGa--CGG--AAGGUGGG- -5' |
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5543 | 5' | -59.6 | NC_001806.1 | + | 5915 | 0.66 | 0.740589 |
Target: 5'- -gCCUugcCGCCCCCCcauugGCCggcgggcgggaCCGCCCc -3' miRNA: 3'- uaGGAu--GUGGGGGGa----CGGaa---------GGUGGG- -5' |
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5543 | 5' | -59.6 | NC_001806.1 | + | 34626 | 0.66 | 0.742503 |
Target: 5'- -aCCaGCGCCCCCCcccCCUcaCCACCa -3' miRNA: 3'- uaGGaUGUGGGGGGac-GGAa-GGUGGg -5' |
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5543 | 5' | -59.6 | NC_001806.1 | + | 30468 | 0.66 | 0.732899 |
Target: 5'- cUCCgGCGCCgCCCCgcucCCcUCCGCCg -3' miRNA: 3'- uAGGaUGUGG-GGGGac--GGaAGGUGGg -5' |
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5543 | 5' | -59.6 | NC_001806.1 | + | 104844 | 0.66 | 0.723211 |
Target: 5'- cAUCCcauCGCCgCCCU-CCUgugCUACCCg -3' miRNA: 3'- -UAGGau-GUGGgGGGAcGGAa--GGUGGG- -5' |
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5543 | 5' | -59.6 | NC_001806.1 | + | 20157 | 0.66 | 0.752013 |
Target: 5'- -aCC--CGCCCCCCgccGCCcgggcCCGCCCc -3' miRNA: 3'- uaGGauGUGGGGGGa--CGGaa---GGUGGG- -5' |
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5543 | 5' | -59.6 | NC_001806.1 | + | 120578 | 0.66 | 0.721264 |
Target: 5'- --gCUACGCCuaCCUCUGCCUgggguuuaaucgCCGCCUc -3' miRNA: 3'- uagGAUGUGG--GGGGACGGAa-----------GGUGGG- -5' |
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5543 | 5' | -59.6 | NC_001806.1 | + | 30664 | 0.66 | 0.731934 |
Target: 5'- -cCCgGgACCCCCCUgacguccucggcgGCCU-CCGCCUc -3' miRNA: 3'- uaGGaUgUGGGGGGA-------------CGGAaGGUGGG- -5' |
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5543 | 5' | -59.6 | NC_001806.1 | + | 147918 | 0.67 | 0.703617 |
Target: 5'- cGUCCg--GCCCCUCgGCCgccCCGCCUc -3' miRNA: 3'- -UAGGaugUGGGGGGaCGGaa-GGUGGG- -5' |
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5543 | 5' | -59.6 | NC_001806.1 | + | 145984 | 0.67 | 0.703617 |
Target: 5'- -cCCUuuuggGCGCCCCguCCcGCCccgCCACCCc -3' miRNA: 3'- uaGGA-----UGUGGGG--GGaCGGaa-GGUGGG- -5' |
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5543 | 5' | -59.6 | NC_001806.1 | + | 114199 | 0.67 | 0.703617 |
Target: 5'- -cCCcGCGCaCCCCCUGCac-CCGgCCa -3' miRNA: 3'- uaGGaUGUG-GGGGGACGgaaGGUgGG- -5' |
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5543 | 5' | -59.6 | NC_001806.1 | + | 100629 | 0.67 | 0.703617 |
Target: 5'- uGUCCgGCgAUCCCggCCUGCCgccgCCGCUCg -3' miRNA: 3'- -UAGGaUG-UGGGG--GGACGGaa--GGUGGG- -5' |
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5543 | 5' | -59.6 | NC_001806.1 | + | 126310 | 0.67 | 0.673809 |
Target: 5'- aGUCCccaAgACCCCCCUgGCCUUUUACg- -3' miRNA: 3'- -UAGGa--UgUGGGGGGA-CGGAAGGUGgg -5' |
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5543 | 5' | -59.6 | NC_001806.1 | + | 68756 | 0.67 | 0.673809 |
Target: 5'- -aCCUuacCACCCCggcguacagCCUGCuCUUCCccGCCCc -3' miRNA: 3'- uaGGAu--GUGGGG---------GGACG-GAAGG--UGGG- -5' |
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5543 | 5' | -59.6 | NC_001806.1 | + | 136824 | 0.67 | 0.663796 |
Target: 5'- cGUUgUACACCCCCUgGCCcUCgguaUACCCc -3' miRNA: 3'- -UAGgAUGUGGGGGGaCGGaAG----GUGGG- -5' |
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5543 | 5' | -59.6 | NC_001806.1 | + | 115621 | 0.67 | 0.663796 |
Target: 5'- -aCCUGCGCCagcgaCCCcGCCcUCCuccgcaguGCCCg -3' miRNA: 3'- uaGGAUGUGGg----GGGaCGGaAGG--------UGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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