Results 21 - 40 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5543 | 5' | -59.6 | NC_001806.1 | + | 38689 | 0.7 | 0.495716 |
Target: 5'- cUCCUcguucCGCCCCCCgggcgggGCCc-CCGCCCc -3' miRNA: 3'- uAGGAu----GUGGGGGGa------CGGaaGGUGGG- -5' |
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5543 | 5' | -59.6 | NC_001806.1 | + | 132205 | 0.7 | 0.495716 |
Target: 5'- cAUUCgcgACACCCCCCagUGCgCgUCCGCCg -3' miRNA: 3'- -UAGGa--UGUGGGGGG--ACG-GaAGGUGGg -5' |
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5543 | 5' | -59.6 | NC_001806.1 | + | 49000 | 0.74 | 0.312716 |
Target: 5'- gGUCCggcgGCACCuaCCCCgGCCU-CCAUCCg -3' miRNA: 3'- -UAGGa---UGUGG--GGGGaCGGAaGGUGGG- -5' |
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5543 | 5' | -59.6 | NC_001806.1 | + | 102958 | 0.74 | 0.298854 |
Target: 5'- -cCCggggGCGCCCCCCcGUCgcccCCACCCg -3' miRNA: 3'- uaGGa---UGUGGGGGGaCGGaa--GGUGGG- -5' |
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5543 | 5' | -59.6 | NC_001806.1 | + | 26731 | 0.75 | 0.278961 |
Target: 5'- cUCCcAC-CCCCCCUcgcgccccuuccGCCUUCCGCCg -3' miRNA: 3'- uAGGaUGuGGGGGGA------------CGGAAGGUGGg -5' |
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5543 | 5' | -59.6 | NC_001806.1 | + | 133625 | 0.75 | 0.266293 |
Target: 5'- -cCUUGC-CCCCCaCUGCCUUCCGCg- -3' miRNA: 3'- uaGGAUGuGGGGG-GACGGAAGGUGgg -5' |
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5543 | 5' | -59.6 | NC_001806.1 | + | 121579 | 0.76 | 0.23108 |
Target: 5'- aGUCCUGCGCCCCgCC-GCCccacaucgaUUCCGCCa -3' miRNA: 3'- -UAGGAUGUGGGG-GGaCGG---------AAGGUGGg -5' |
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5543 | 5' | -59.6 | NC_001806.1 | + | 73088 | 0.76 | 0.230528 |
Target: 5'- uGUCCUcgccucgGCACCCCCCgacccgGCCgggCCGCCg -3' miRNA: 3'- -UAGGA-------UGUGGGGGGa-----CGGaa-GGUGGg -5' |
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5543 | 5' | -59.6 | NC_001806.1 | + | 79601 | 0.76 | 0.225608 |
Target: 5'- uUCCccgGCGCCCCCCgaUGCCa-CCGCCCc -3' miRNA: 3'- uAGGa--UGUGGGGGG--ACGGaaGGUGGG- -5' |
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5543 | 5' | -59.6 | NC_001806.1 | + | 45753 | 0.77 | 0.199875 |
Target: 5'- -aCCUGCACCaCCCCcGCCgUCCgaACCCa -3' miRNA: 3'- uaGGAUGUGG-GGGGaCGGaAGG--UGGG- -5' |
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5543 | 5' | -59.6 | NC_001806.1 | + | 21403 | 0.73 | 0.349479 |
Target: 5'- gAUCCcgACGCCcgaCCCCgcgGCCUcgCCGCCCc -3' miRNA: 3'- -UAGGa-UGUGG---GGGGa--CGGAa-GGUGGG- -5' |
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5543 | 5' | -59.6 | NC_001806.1 | + | 129661 | 0.73 | 0.357192 |
Target: 5'- -cCCUGCGCCCgCCCggGCCgccgagCgGCCCg -3' miRNA: 3'- uaGGAUGUGGG-GGGa-CGGaa----GgUGGG- -5' |
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5543 | 5' | -59.6 | NC_001806.1 | + | 94219 | 0.7 | 0.495716 |
Target: 5'- -gCCUuucuCACCCCgCUGUCggUCACCCu -3' miRNA: 3'- uaGGAu---GUGGGGgGACGGaaGGUGGG- -5' |
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5543 | 5' | -59.6 | NC_001806.1 | + | 19778 | 0.7 | 0.486311 |
Target: 5'- cUCCUccgcccccGCGuCCCCCCU-CC-UCCGCCCc -3' miRNA: 3'- uAGGA--------UGU-GGGGGGAcGGaAGGUGGG- -5' |
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5543 | 5' | -59.6 | NC_001806.1 | + | 19734 | 0.7 | 0.486311 |
Target: 5'- cUCCUccgcccccGCGuCCCCCCU-CC-UCCGCCCc -3' miRNA: 3'- uAGGA--------UGU-GGGGGGAcGGaAGGUGGG- -5' |
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5543 | 5' | -59.6 | NC_001806.1 | + | 26669 | 0.7 | 0.476993 |
Target: 5'- -gCCgcCGCCCCCCggccccgGCCcccaCCGCCCg -3' miRNA: 3'- uaGGauGUGGGGGGa------CGGaa--GGUGGG- -5' |
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5543 | 5' | -59.6 | NC_001806.1 | + | 90498 | 0.71 | 0.440644 |
Target: 5'- --aCUACACCCCCCgGCCcggCgACCUc -3' miRNA: 3'- uagGAUGUGGGGGGaCGGaa-GgUGGG- -5' |
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5543 | 5' | -59.6 | NC_001806.1 | + | 101572 | 0.71 | 0.431805 |
Target: 5'- -cCCUAaugcccccuCCCCCCUcGCCcaCCACCCa -3' miRNA: 3'- uaGGAUgu-------GGGGGGA-CGGaaGGUGGG- -5' |
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5543 | 5' | -59.6 | NC_001806.1 | + | 52681 | 0.72 | 0.405922 |
Target: 5'- -gCCUACACUcgaCCCCcGCg-UCCACCCg -3' miRNA: 3'- uaGGAUGUGG---GGGGaCGgaAGGUGGG- -5' |
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5543 | 5' | -59.6 | NC_001806.1 | + | 50812 | 0.72 | 0.397514 |
Target: 5'- -aCgUACACCCCCCUGCgCUacgcgugcguccUCCgagcgACCCa -3' miRNA: 3'- uaGgAUGUGGGGGGACG-GA------------AGG-----UGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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