miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5543 5' -59.6 NC_001806.1 + 23113 0.65 0.767013
Target:  5'- -cCCUGgGCCCCgCgCUGCCgcgggacccgcgCCugCCg -3'
miRNA:   3'- uaGGAUgUGGGG-G-GACGGaa----------GGugGG- -5'
5543 5' -59.6 NC_001806.1 + 5023 0.66 0.742503
Target:  5'- cGUCCc-CGCCCUCCUccgucuccgcGCC--CCACCCg -3'
miRNA:   3'- -UAGGauGUGGGGGGA----------CGGaaGGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 43756 0.66 0.752013
Target:  5'- cUCCUugggGCACCCCCacacGCCg-CC-CCCg -3'
miRNA:   3'- uAGGA----UGUGGGGGga--CGGaaGGuGGG- -5'
5543 5' -59.6 NC_001806.1 + 30134 0.66 0.713448
Target:  5'- cUCCccacAgGCCCCCCgcggcgcccaUGCCaggcUCCGCCCc -3'
miRNA:   3'- uAGGa---UgUGGGGGG----------ACGGa---AGGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 104844 0.66 0.723211
Target:  5'- cAUCCcauCGCCgCCCU-CCUgugCUACCCg -3'
miRNA:   3'- -UAGGau-GUGGgGGGAcGGAa--GGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 5915 0.66 0.740589
Target:  5'- -gCCUugcCGCCCCCCcauugGCCggcgggcgggaCCGCCCc -3'
miRNA:   3'- uaGGAu--GUGGGGGGa----CGGaa---------GGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 135802 0.66 0.713448
Target:  5'- gGUCCUG-GCCCgcagaCCCgcgGCUguUUCCGCCCu -3'
miRNA:   3'- -UAGGAUgUGGG-----GGGa--CGG--AAGGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 75914 0.66 0.732899
Target:  5'- -cCCaUACACCCCCgaGaaCCagcgCCACCCc -3'
miRNA:   3'- uaGG-AUGUGGGGGgaC--GGaa--GGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 34679 0.66 0.732899
Target:  5'- -aCCgACACCUCCCgcGCacccCCGCCCa -3'
miRNA:   3'- uaGGaUGUGGGGGGa-CGgaa-GGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 30468 0.66 0.732899
Target:  5'- cUCCgGCGCCgCCCCgcucCCcUCCGCCg -3'
miRNA:   3'- uAGGaUGUGG-GGGGac--GGaAGGUGGg -5'
5543 5' -59.6 NC_001806.1 + 74879 0.66 0.713448
Target:  5'- -cCCUGCggGCCUCCCUGCCggCgGgCUg -3'
miRNA:   3'- uaGGAUG--UGGGGGGACGGaaGgUgGG- -5'
5543 5' -59.6 NC_001806.1 + 34626 0.66 0.742503
Target:  5'- -aCCaGCGCCCCCCcccCCUcaCCACCa -3'
miRNA:   3'- uaGGaUGUGGGGGGac-GGAa-GGUGGg -5'
5543 5' -59.6 NC_001806.1 + 120578 0.66 0.721264
Target:  5'- --gCUACGCCuaCCUCUGCCUgggguuuaaucgCCGCCUc -3'
miRNA:   3'- uagGAUGUGG--GGGGACGGAa-----------GGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 88293 0.66 0.752013
Target:  5'- gGUCgCUcAUGCCCCCCUcgaugGCCagguugUCCGCCg -3'
miRNA:   3'- -UAG-GA-UGUGGGGGGA-----CGGa-----AGGUGGg -5'
5543 5' -59.6 NC_001806.1 + 125374 0.66 0.732899
Target:  5'- uUCCgcugACaACCaccuuccguCCCCUGCCccccCCACCCc -3'
miRNA:   3'- uAGGa---UG-UGG---------GGGGACGGaa--GGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 30664 0.66 0.731934
Target:  5'- -cCCgGgACCCCCCUgacguccucggcgGCCU-CCGCCUc -3'
miRNA:   3'- uaGGaUgUGGGGGGA-------------CGGAaGGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 48621 0.66 0.713448
Target:  5'- -aCCcGCAUCCCCCgucuggGUUUUCCccuCCCg -3'
miRNA:   3'- uaGGaUGUGGGGGGa-----CGGAAGGu--GGG- -5'
5543 5' -59.6 NC_001806.1 + 20157 0.66 0.752013
Target:  5'- -aCC--CGCCCCCCgccGCCcgggcCCGCCCc -3'
miRNA:   3'- uaGGauGUGGGGGGa--CGGaa---GGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 73472 0.66 0.752013
Target:  5'- -cCCggcCGCCgCCCUGCUggagUUUACCCu -3'
miRNA:   3'- uaGGau-GUGGgGGGACGGa---AGGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 26518 0.66 0.732899
Target:  5'- -gCCgcCGCCCCCC-GCCggugggCC-CCCg -3'
miRNA:   3'- uaGGauGUGGGGGGaCGGaa----GGuGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.