Results 1 - 20 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5543 | 5' | -59.6 | NC_001806.1 | + | 979 | 0.68 | 0.643704 |
Target: 5'- -cCCU-CGCCCCCUcccGCCc-CCGCCCc -3' miRNA: 3'- uaGGAuGUGGGGGGa--CGGaaGGUGGG- -5' |
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5543 | 5' | -59.6 | NC_001806.1 | + | 2297 | 0.69 | 0.553693 |
Target: 5'- cUCCggcgGC-CCCCCCgagGCCccgCCGCCg -3' miRNA: 3'- uAGGa---UGuGGGGGGa--CGGaa-GGUGGg -5' |
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5543 | 5' | -59.6 | NC_001806.1 | + | 4116 | 0.68 | 0.623577 |
Target: 5'- cUCCgccucggGCGCCCCCCagagGCCcgggcggcugUCGCCCa -3' miRNA: 3'- uAGGa------UGUGGGGGGa---CGGaa--------GGUGGG- -5' |
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5543 | 5' | -59.6 | NC_001806.1 | + | 5023 | 0.66 | 0.742503 |
Target: 5'- cGUCCc-CGCCCUCCUccgucuccgcGCC--CCACCCg -3' miRNA: 3'- -UAGGauGUGGGGGGA----------CGGaaGGUGGG- -5' |
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5543 | 5' | -59.6 | NC_001806.1 | + | 5842 | 0.68 | 0.593451 |
Target: 5'- cGUCCccGgGCCCCCCgGUC--CCGCCCg -3' miRNA: 3'- -UAGGa-UgUGGGGGGaCGGaaGGUGGG- -5' |
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5543 | 5' | -59.6 | NC_001806.1 | + | 5915 | 0.66 | 0.740589 |
Target: 5'- -gCCUugcCGCCCCCCcauugGCCggcgggcgggaCCGCCCc -3' miRNA: 3'- uaGGAu--GUGGGGGGa----CGGaa---------GGUGGG- -5' |
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5543 | 5' | -59.6 | NC_001806.1 | + | 7504 | 0.66 | 0.760485 |
Target: 5'- ---gUAUGCCCCCCUGgcgagcccagaccCCUUCUcCCCa -3' miRNA: 3'- uaggAUGUGGGGGGAC-------------GGAAGGuGGG- -5' |
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5543 | 5' | -59.6 | NC_001806.1 | + | 9632 | 0.68 | 0.643704 |
Target: 5'- -cCCU-UACCCgaggCCCUGCUUUuaaCCGCCCg -3' miRNA: 3'- uaGGAuGUGGG----GGGACGGAA---GGUGGG- -5' |
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5543 | 5' | -59.6 | NC_001806.1 | + | 16967 | 0.68 | 0.643704 |
Target: 5'- cUCCUcCuuCCUCCUGCCcugUCC-CCCg -3' miRNA: 3'- uAGGAuGugGGGGGACGGa--AGGuGGG- -5' |
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5543 | 5' | -59.6 | NC_001806.1 | + | 17139 | 0.67 | 0.683789 |
Target: 5'- cUCCcccggACGCCUCCgCUGCCggUCGCuCCa -3' miRNA: 3'- uAGGa----UGUGGGGG-GACGGaaGGUG-GG- -5' |
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5543 | 5' | -59.6 | NC_001806.1 | + | 17661 | 0.67 | 0.673809 |
Target: 5'- -aCCca-GCCCCCCUcGCC-UCUACCa -3' miRNA: 3'- uaGGaugUGGGGGGA-CGGaAGGUGGg -5' |
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5543 | 5' | -59.6 | NC_001806.1 | + | 19734 | 0.7 | 0.486311 |
Target: 5'- cUCCUccgcccccGCGuCCCCCCU-CC-UCCGCCCc -3' miRNA: 3'- uAGGA--------UGU-GGGGGGAcGGaAGGUGGG- -5' |
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5543 | 5' | -59.6 | NC_001806.1 | + | 19778 | 0.7 | 0.486311 |
Target: 5'- cUCCUccgcccccGCGuCCCCCCU-CC-UCCGCCCc -3' miRNA: 3'- uAGGA--------UGU-GGGGGGAcGGaAGGUGGG- -5' |
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5543 | 5' | -59.6 | NC_001806.1 | + | 19822 | 0.69 | 0.534103 |
Target: 5'- cUCCUcCGCCCCCgCgucccccCCUccUCCGCCCa -3' miRNA: 3'- uAGGAuGUGGGGG-Gac-----GGA--AGGUGGG- -5' |
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5543 | 5' | -59.6 | NC_001806.1 | + | 20157 | 0.66 | 0.752013 |
Target: 5'- -aCC--CGCCCCCCgccGCCcgggcCCGCCCc -3' miRNA: 3'- uaGGauGUGGGGGGa--CGGaa---GGUGGG- -5' |
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5543 | 5' | -59.6 | NC_001806.1 | + | 21403 | 0.73 | 0.349479 |
Target: 5'- gAUCCcgACGCCcgaCCCCgcgGCCUcgCCGCCCc -3' miRNA: 3'- -UAGGa-UGUGG---GGGGa--CGGAa-GGUGGG- -5' |
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5543 | 5' | -59.6 | NC_001806.1 | + | 21806 | 0.69 | 0.583455 |
Target: 5'- -cCCgggcggACGCCgCCCCcGCCcgggCCACCCc -3' miRNA: 3'- uaGGa-----UGUGG-GGGGaCGGaa--GGUGGG- -5' |
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5543 | 5' | -59.6 | NC_001806.1 | + | 22677 | 0.66 | 0.752013 |
Target: 5'- gAUCCU-CGCCgCCCUggggcgGCUgUCCGCCg -3' miRNA: 3'- -UAGGAuGUGG-GGGGa-----CGGaAGGUGGg -5' |
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5543 | 5' | -59.6 | NC_001806.1 | + | 23113 | 0.65 | 0.767013 |
Target: 5'- -cCCUGgGCCCCgCgCUGCCgcgggacccgcgCCugCCg -3' miRNA: 3'- uaGGAUgUGGGG-G-GACGGaa----------GGugGG- -5' |
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5543 | 5' | -59.6 | NC_001806.1 | + | 23197 | 0.67 | 0.679802 |
Target: 5'- -gCCUGCGCCCCCUgcuggcggcggcgGCCagCgCACCg -3' miRNA: 3'- uaGGAUGUGGGGGGa------------CGGaaG-GUGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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