miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5543 5' -59.6 NC_001806.1 + 144110 1.09 0.001231
Target:  5'- cAUCCUACACCCCCCUGCCUUCCACCCu -3'
miRNA:   3'- -UAGGAUGUGGGGGGACGGAAGGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 45753 0.77 0.199875
Target:  5'- -aCCUGCACCaCCCCcGCCgUCCgaACCCa -3'
miRNA:   3'- uaGGAUGUGG-GGGGaCGGaAGG--UGGG- -5'
5543 5' -59.6 NC_001806.1 + 79601 0.76 0.225608
Target:  5'- uUCCccgGCGCCCCCCgaUGCCa-CCGCCCc -3'
miRNA:   3'- uAGGa--UGUGGGGGG--ACGGaaGGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 73088 0.76 0.230528
Target:  5'- uGUCCUcgccucgGCACCCCCCgacccgGCCgggCCGCCg -3'
miRNA:   3'- -UAGGA-------UGUGGGGGGa-----CGGaa-GGUGGg -5'
5543 5' -59.6 NC_001806.1 + 121579 0.76 0.23108
Target:  5'- aGUCCUGCGCCCCgCC-GCCccacaucgaUUCCGCCa -3'
miRNA:   3'- -UAGGAUGUGGGG-GGaCGG---------AAGGUGGg -5'
5543 5' -59.6 NC_001806.1 + 133625 0.75 0.266293
Target:  5'- -cCUUGC-CCCCCaCUGCCUUCCGCg- -3'
miRNA:   3'- uaGGAUGuGGGGG-GACGGAAGGUGgg -5'
5543 5' -59.6 NC_001806.1 + 26731 0.75 0.278961
Target:  5'- cUCCcAC-CCCCCCUcgcgccccuuccGCCUUCCGCCg -3'
miRNA:   3'- uAGGaUGuGGGGGGA------------CGGAAGGUGGg -5'
5543 5' -59.6 NC_001806.1 + 102958 0.74 0.298854
Target:  5'- -cCCggggGCGCCCCCCcGUCgcccCCACCCg -3'
miRNA:   3'- uaGGa---UGUGGGGGGaCGGaa--GGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 49000 0.74 0.312716
Target:  5'- gGUCCggcgGCACCuaCCCCgGCCU-CCAUCCg -3'
miRNA:   3'- -UAGGa---UGUGG--GGGGaCGGAaGGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 21403 0.73 0.349479
Target:  5'- gAUCCcgACGCCcgaCCCCgcgGCCUcgCCGCCCc -3'
miRNA:   3'- -UAGGa-UGUGG---GGGGa--CGGAa-GGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 129661 0.73 0.357192
Target:  5'- -cCCUGCGCCCgCCCggGCCgccgagCgGCCCg -3'
miRNA:   3'- uaGGAUGUGGG-GGGa-CGGaa----GgUGGG- -5'
5543 5' -59.6 NC_001806.1 + 50812 0.72 0.397514
Target:  5'- -aCgUACACCCCCCUGCgCUacgcgugcguccUCCgagcgACCCa -3'
miRNA:   3'- uaGgAUGUGGGGGGACG-GA------------AGG-----UGGG- -5'
5543 5' -59.6 NC_001806.1 + 52681 0.72 0.405922
Target:  5'- -gCCUACACUcgaCCCCcGCg-UCCACCCg -3'
miRNA:   3'- uaGGAUGUGG---GGGGaCGgaAGGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 101572 0.71 0.431805
Target:  5'- -cCCUAaugcccccuCCCCCCUcGCCcaCCACCCa -3'
miRNA:   3'- uaGGAUgu-------GGGGGGA-CGGaaGGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 90498 0.71 0.440644
Target:  5'- --aCUACACCCCCCgGCCcggCgACCUc -3'
miRNA:   3'- uagGAUGUGGGGGGaCGGaa-GgUGGG- -5'
5543 5' -59.6 NC_001806.1 + 26669 0.7 0.476993
Target:  5'- -gCCgcCGCCCCCCggccccgGCCcccaCCGCCCg -3'
miRNA:   3'- uaGGauGUGGGGGGa------CGGaa--GGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 19778 0.7 0.486311
Target:  5'- cUCCUccgcccccGCGuCCCCCCU-CC-UCCGCCCc -3'
miRNA:   3'- uAGGA--------UGU-GGGGGGAcGGaAGGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 19734 0.7 0.486311
Target:  5'- cUCCUccgcccccGCGuCCCCCCU-CC-UCCGCCCc -3'
miRNA:   3'- uAGGA--------UGU-GGGGGGAcGGaAGGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 132205 0.7 0.495716
Target:  5'- cAUUCgcgACACCCCCCagUGCgCgUCCGCCg -3'
miRNA:   3'- -UAGGa--UGUGGGGGG--ACG-GaAGGUGGg -5'
5543 5' -59.6 NC_001806.1 + 38689 0.7 0.495716
Target:  5'- cUCCUcguucCGCCCCCCgggcgggGCCc-CCGCCCc -3'
miRNA:   3'- uAGGAu----GUGGGGGGa------CGGaaGGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.