miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5544 3' -62 NC_001806.1 + 42018 0.66 0.702454
Target:  5'- gCUGGCcGCGGggUUGGGGUCguggguCGUCaCGg -3'
miRNA:   3'- -GGCCGcCGUCuuGGCCCCAG------GCAG-GU- -5'
5544 3' -62 NC_001806.1 + 78921 0.66 0.702454
Target:  5'- gCCGaGCGGCcccucgcCCGGGGcCCG-CCGu -3'
miRNA:   3'- -GGC-CGCCGucuu---GGCCCCaGGCaGGU- -5'
5544 3' -62 NC_001806.1 + 59132 0.66 0.702454
Target:  5'- uUCGGUGGUGagggcagccGGGCCGGGGUCUcggGUgCGg -3'
miRNA:   3'- -GGCCGCCGU---------CUUGGCCCCAGG---CAgGU- -5'
5544 3' -62 NC_001806.1 + 127516 0.66 0.702454
Target:  5'- aCGGCGGaCGGugcuguACaCGGGGUCC-UCg- -3'
miRNA:   3'- gGCCGCC-GUCu-----UG-GCCCCAGGcAGgu -5'
5544 3' -62 NC_001806.1 + 119750 0.66 0.702454
Target:  5'- gCCGGCGGCGacggccGGACUGGcuguGGagCCGUCg- -3'
miRNA:   3'- -GGCCGCCGU------CUUGGCC----CCa-GGCAGgu -5'
5544 3' -62 NC_001806.1 + 136994 0.66 0.702454
Target:  5'- aUGGCGGCGGccGgCGGGGagCG-CCAg -3'
miRNA:   3'- gGCCGCCGUCu-UgGCCCCagGCaGGU- -5'
5544 3' -62 NC_001806.1 + 3511 0.66 0.692918
Target:  5'- gUGGCgGGCGGcgUCGGGGU-CGUCg- -3'
miRNA:   3'- gGCCG-CCGUCuuGGCCCCAgGCAGgu -5'
5544 3' -62 NC_001806.1 + 24537 0.66 0.692918
Target:  5'- gCCgGGCGGCGGccUCGGGGaccaCCGacgCCAu -3'
miRNA:   3'- -GG-CCGCCGUCuuGGCCCCa---GGCa--GGU- -5'
5544 3' -62 NC_001806.1 + 57756 0.66 0.692918
Target:  5'- gCGGCGGgAcGGGCCGccGUCCcGUCCGc -3'
miRNA:   3'- gGCCGCCgU-CUUGGCccCAGG-CAGGU- -5'
5544 3' -62 NC_001806.1 + 96455 0.66 0.691962
Target:  5'- gUCGGCGGCuccGAguucccccggcacGCCuGGGGUCgCGgCCGc -3'
miRNA:   3'- -GGCCGCCGu--CU-------------UGG-CCCCAG-GCaGGU- -5'
5544 3' -62 NC_001806.1 + 18376 0.66 0.683338
Target:  5'- -aGGCGGUGGAGaagcgcauuuuCCGGcagCCGUCCAg -3'
miRNA:   3'- ggCCGCCGUCUU-----------GGCCccaGGCAGGU- -5'
5544 3' -62 NC_001806.1 + 5105 0.66 0.683338
Target:  5'- gUCGGUggGGCccggGGAGCCGGGGcgcugcuuguucUCCGacgCCAu -3'
miRNA:   3'- -GGCCG--CCG----UCUUGGCCCC------------AGGCa--GGU- -5'
5544 3' -62 NC_001806.1 + 78672 0.66 0.683338
Target:  5'- gCUGGCGGCAGugcuCCuGGGcgcgcCCGUCg- -3'
miRNA:   3'- -GGCCGCCGUCuu--GGcCCCa----GGCAGgu -5'
5544 3' -62 NC_001806.1 + 94541 0.66 0.683338
Target:  5'- -gGGCGGUGGggUCGGGccuuaUCGUCCc -3'
miRNA:   3'- ggCCGCCGUCuuGGCCCca---GGCAGGu -5'
5544 3' -62 NC_001806.1 + 49452 0.66 0.673719
Target:  5'- cCCGGCaGGgGGGauACCuGGGUcCCGUCg- -3'
miRNA:   3'- -GGCCG-CCgUCU--UGGcCCCA-GGCAGgu -5'
5544 3' -62 NC_001806.1 + 68100 0.66 0.673719
Target:  5'- gCCGGgcgucaUGGCAG-ACCGcGGUcucCCGUCCGa -3'
miRNA:   3'- -GGCC------GCCGUCuUGGCcCCA---GGCAGGU- -5'
5544 3' -62 NC_001806.1 + 27278 0.66 0.673719
Target:  5'- aUCGGCGGCcgccAGcGCggCGGGGcCCGgCCAa -3'
miRNA:   3'- -GGCCGCCG----UCuUG--GCCCCaGGCaGGU- -5'
5544 3' -62 NC_001806.1 + 150947 0.66 0.673719
Target:  5'- cCCGGCGcCGGAACCGagcccGGUCgGcCCGc -3'
miRNA:   3'- -GGCCGCcGUCUUGGCc----CCAGgCaGGU- -5'
5544 3' -62 NC_001806.1 + 147890 0.66 0.672755
Target:  5'- -gGGgGGCGGGucuguugACaagGGGGcCCGUCCGg -3'
miRNA:   3'- ggCCgCCGUCU-------UGg--CCCCaGGCAGGU- -5'
5544 3' -62 NC_001806.1 + 56656 0.66 0.667932
Target:  5'- gCCGGCGGCccgugggaucguuggGGggUCGGGGgggaCGggggCCc -3'
miRNA:   3'- -GGCCGCCG---------------UCuuGGCCCCag--GCa---GGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.