Results 61 - 80 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5544 | 3' | -62 | NC_001806.1 | + | 78921 | 0.66 | 0.702454 |
Target: 5'- gCCGaGCGGCcccucgcCCGGGGcCCG-CCGu -3' miRNA: 3'- -GGC-CGCCGucuu---GGCCCCaGGCaGGU- -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 81990 | 0.67 | 0.604967 |
Target: 5'- cUCGGCGGCgcggcacAGGAuCCGucucGUCCGUCCGg -3' miRNA: 3'- -GGCCGCCG-------UCUU-GGCcc--CAGGCAGGU- -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 86026 | 0.67 | 0.644709 |
Target: 5'- gCCGGggagGGCAGGGCCGcGGGgggggcgggCuCGUCCc -3' miRNA: 3'- -GGCCg---CCGUCUUGGC-CCCa--------G-GCAGGu -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 89088 | 0.69 | 0.483663 |
Target: 5'- cCCGGCGcGCuucuCCGGGGgggcauccUCGUCCAg -3' miRNA: 3'- -GGCCGC-CGucuuGGCCCCa-------GGCAGGU- -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 93880 | 0.68 | 0.548409 |
Target: 5'- gCCGGuCGGCGGGcCCGcGGGaggCCGcCCc -3' miRNA: 3'- -GGCC-GCCGUCUuGGC-CCCa--GGCaGGu -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 94541 | 0.66 | 0.683338 |
Target: 5'- -gGGCGGUGGggUCGGGccuuaUCGUCCc -3' miRNA: 3'- ggCCGCCGUCuuGGCCCca---GGCAGGu -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 96387 | 0.71 | 0.374484 |
Target: 5'- cCCGcGCGGgGGcGCCGGuGGUUCGUCg- -3' miRNA: 3'- -GGC-CGCCgUCuUGGCC-CCAGGCAGgu -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 96455 | 0.66 | 0.691962 |
Target: 5'- gUCGGCGGCuccGAguucccccggcacGCCuGGGGUCgCGgCCGc -3' miRNA: 3'- -GGCCGCCGu--CU-------------UGG-CCCCAG-GCaGGU- -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 96502 | 0.67 | 0.596268 |
Target: 5'- cCCaGGCGGC-GAACgGGGGcccugccacUCCGgcgCCGc -3' miRNA: 3'- -GG-CCGCCGuCUUGgCCCC---------AGGCa--GGU- -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 99480 | 0.68 | 0.567436 |
Target: 5'- aUCGGCGGCGcGGGCCGu-GUCaaCGUCCAc -3' miRNA: 3'- -GGCCGCCGU-CUUGGCccCAG--GCAGGU- -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 99573 | 0.71 | 0.390175 |
Target: 5'- uCCGGUGGCggcgggggGGAACgCGGGcUCCGUCg- -3' miRNA: 3'- -GGCCGCCG--------UCUUG-GCCCcAGGCAGgu -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 100388 | 0.7 | 0.43974 |
Target: 5'- gCCgGGCGGCgcgGGGGCCGGGGUgCCcgauGUCgGa -3' miRNA: 3'- -GG-CCGCCG---UCUUGGCCCCA-GG----CAGgU- -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 113381 | 0.67 | 0.635011 |
Target: 5'- uCCGGCGGCguuccGGGAcgcCCGGGGcCUGgagCUg -3' miRNA: 3'- -GGCCGCCG-----UCUU---GGCCCCaGGCa--GGu -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 119750 | 0.66 | 0.702454 |
Target: 5'- gCCGGCGGCGacggccGGACUGGcuguGGagCCGUCg- -3' miRNA: 3'- -GGCCGCCGU------CUUGGCC----CCa-GGCAGgu -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 127516 | 0.66 | 0.702454 |
Target: 5'- aCGGCGGaCGGugcuguACaCGGGGUCC-UCg- -3' miRNA: 3'- gGCCGCC-GUCu-----UG-GCCCCAGGcAGgu -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 132981 | 0.67 | 0.614648 |
Target: 5'- gCUGGUGGUggccgcucccucAGAgcccuggGCCGGGG-CCGUCUu -3' miRNA: 3'- -GGCCGCCG------------UCU-------UGGCCCCaGGCAGGu -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 136994 | 0.66 | 0.702454 |
Target: 5'- aUGGCGGCGGccGgCGGGGagCG-CCAg -3' miRNA: 3'- gGCCGCCGUCu-UgGCCCCagGCaGGU- -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 140543 | 0.69 | 0.483663 |
Target: 5'- aCGGCggGGCAGAGCCGc---CCGUCCGa -3' miRNA: 3'- gGCCG--CCGUCUUGGCcccaGGCAGGU- -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 141428 | 0.67 | 0.615617 |
Target: 5'- gCGGCGcGCGGccAACCGGcGGauaacUCCGcCCAc -3' miRNA: 3'- gGCCGC-CGUC--UUGGCC-CC-----AGGCaGGU- -5' |
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5544 | 3' | -62 | NC_001806.1 | + | 142239 | 1.09 | 0.000981 |
Target: 5'- uCCGGCGGCAGAACCGGGGUCCGUCCAg -3' miRNA: 3'- -GGCCGCCGUCUUGGCCCCAGGCAGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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