miRNA display CGI


Results 61 - 80 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5544 3' -62 NC_001806.1 + 78921 0.66 0.702454
Target:  5'- gCCGaGCGGCcccucgcCCGGGGcCCG-CCGu -3'
miRNA:   3'- -GGC-CGCCGucuu---GGCCCCaGGCaGGU- -5'
5544 3' -62 NC_001806.1 + 81990 0.67 0.604967
Target:  5'- cUCGGCGGCgcggcacAGGAuCCGucucGUCCGUCCGg -3'
miRNA:   3'- -GGCCGCCG-------UCUU-GGCcc--CAGGCAGGU- -5'
5544 3' -62 NC_001806.1 + 86026 0.67 0.644709
Target:  5'- gCCGGggagGGCAGGGCCGcGGGgggggcgggCuCGUCCc -3'
miRNA:   3'- -GGCCg---CCGUCUUGGC-CCCa--------G-GCAGGu -5'
5544 3' -62 NC_001806.1 + 89088 0.69 0.483663
Target:  5'- cCCGGCGcGCuucuCCGGGGgggcauccUCGUCCAg -3'
miRNA:   3'- -GGCCGC-CGucuuGGCCCCa-------GGCAGGU- -5'
5544 3' -62 NC_001806.1 + 93880 0.68 0.548409
Target:  5'- gCCGGuCGGCGGGcCCGcGGGaggCCGcCCc -3'
miRNA:   3'- -GGCC-GCCGUCUuGGC-CCCa--GGCaGGu -5'
5544 3' -62 NC_001806.1 + 94541 0.66 0.683338
Target:  5'- -gGGCGGUGGggUCGGGccuuaUCGUCCc -3'
miRNA:   3'- ggCCGCCGUCuuGGCCCca---GGCAGGu -5'
5544 3' -62 NC_001806.1 + 96387 0.71 0.374484
Target:  5'- cCCGcGCGGgGGcGCCGGuGGUUCGUCg- -3'
miRNA:   3'- -GGC-CGCCgUCuUGGCC-CCAGGCAGgu -5'
5544 3' -62 NC_001806.1 + 96455 0.66 0.691962
Target:  5'- gUCGGCGGCuccGAguucccccggcacGCCuGGGGUCgCGgCCGc -3'
miRNA:   3'- -GGCCGCCGu--CU-------------UGG-CCCCAG-GCaGGU- -5'
5544 3' -62 NC_001806.1 + 96502 0.67 0.596268
Target:  5'- cCCaGGCGGC-GAACgGGGGcccugccacUCCGgcgCCGc -3'
miRNA:   3'- -GG-CCGCCGuCUUGgCCCC---------AGGCa--GGU- -5'
5544 3' -62 NC_001806.1 + 99480 0.68 0.567436
Target:  5'- aUCGGCGGCGcGGGCCGu-GUCaaCGUCCAc -3'
miRNA:   3'- -GGCCGCCGU-CUUGGCccCAG--GCAGGU- -5'
5544 3' -62 NC_001806.1 + 99573 0.71 0.390175
Target:  5'- uCCGGUGGCggcgggggGGAACgCGGGcUCCGUCg- -3'
miRNA:   3'- -GGCCGCCG--------UCUUG-GCCCcAGGCAGgu -5'
5544 3' -62 NC_001806.1 + 100388 0.7 0.43974
Target:  5'- gCCgGGCGGCgcgGGGGCCGGGGUgCCcgauGUCgGa -3'
miRNA:   3'- -GG-CCGCCG---UCUUGGCCCCA-GG----CAGgU- -5'
5544 3' -62 NC_001806.1 + 113381 0.67 0.635011
Target:  5'- uCCGGCGGCguuccGGGAcgcCCGGGGcCUGgagCUg -3'
miRNA:   3'- -GGCCGCCG-----UCUU---GGCCCCaGGCa--GGu -5'
5544 3' -62 NC_001806.1 + 119750 0.66 0.702454
Target:  5'- gCCGGCGGCGacggccGGACUGGcuguGGagCCGUCg- -3'
miRNA:   3'- -GGCCGCCGU------CUUGGCC----CCa-GGCAGgu -5'
5544 3' -62 NC_001806.1 + 127516 0.66 0.702454
Target:  5'- aCGGCGGaCGGugcuguACaCGGGGUCC-UCg- -3'
miRNA:   3'- gGCCGCC-GUCu-----UG-GCCCCAGGcAGgu -5'
5544 3' -62 NC_001806.1 + 132981 0.67 0.614648
Target:  5'- gCUGGUGGUggccgcucccucAGAgcccuggGCCGGGG-CCGUCUu -3'
miRNA:   3'- -GGCCGCCG------------UCU-------UGGCCCCaGGCAGGu -5'
5544 3' -62 NC_001806.1 + 136994 0.66 0.702454
Target:  5'- aUGGCGGCGGccGgCGGGGagCG-CCAg -3'
miRNA:   3'- gGCCGCCGUCu-UgGCCCCagGCaGGU- -5'
5544 3' -62 NC_001806.1 + 140543 0.69 0.483663
Target:  5'- aCGGCggGGCAGAGCCGc---CCGUCCGa -3'
miRNA:   3'- gGCCG--CCGUCUUGGCcccaGGCAGGU- -5'
5544 3' -62 NC_001806.1 + 141428 0.67 0.615617
Target:  5'- gCGGCGcGCGGccAACCGGcGGauaacUCCGcCCAc -3'
miRNA:   3'- gGCCGC-CGUC--UUGGCC-CC-----AGGCaGGU- -5'
5544 3' -62 NC_001806.1 + 142239 1.09 0.000981
Target:  5'- uCCGGCGGCAGAACCGGGGUCCGUCCAg -3'
miRNA:   3'- -GGCCGCCGUCUUGGCCCCAGGCAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.