miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5544 3' -62 NC_001806.1 + 38395 0.7 0.448346
Target:  5'- gCGGCGGCucuccGCCggcucgggGGGGUCCucGUCCAg -3'
miRNA:   3'- gGCCGCCGucu--UGG--------CCCCAGG--CAGGU- -5'
5544 3' -62 NC_001806.1 + 39410 0.68 0.53897
Target:  5'- -gGGCGGUGGuacaagaagguGACC-GGGUCCGUCuCAa -3'
miRNA:   3'- ggCCGCCGUC-----------UUGGcCCCAGGCAG-GU- -5'
5544 3' -62 NC_001806.1 + 42018 0.66 0.702454
Target:  5'- gCUGGCcGCGGggUUGGGGUCguggguCGUCaCGg -3'
miRNA:   3'- -GGCCGcCGUCuuGGCCCCAG------GCAG-GU- -5'
5544 3' -62 NC_001806.1 + 44784 0.68 0.586626
Target:  5'- aUCGGCucGGUgAGGGCCGGGGgggUCG-CCAg -3'
miRNA:   3'- -GGCCG--CCG-UCUUGGCCCCa--GGCaGGU- -5'
5544 3' -62 NC_001806.1 + 45284 0.67 0.635011
Target:  5'- gCGGCGGgAGAcgcgggcccGCgCGGGGagCCGcCCGg -3'
miRNA:   3'- gGCCGCCgUCU---------UG-GCCCCa-GGCaGGU- -5'
5544 3' -62 NC_001806.1 + 46467 0.67 0.596268
Target:  5'- aUGGCGGCGGuccagcuCUGGGacauGUCgCGUCCGc -3'
miRNA:   3'- gGCCGCCGUCuu-----GGCCC----CAG-GCAGGU- -5'
5544 3' -62 NC_001806.1 + 49452 0.66 0.673719
Target:  5'- cCCGGCaGGgGGGauACCuGGGUcCCGUCg- -3'
miRNA:   3'- -GGCCG-CCgUCU--UGGcCCCA-GGCAGgu -5'
5544 3' -62 NC_001806.1 + 55726 0.68 0.567436
Target:  5'- gCUGGCGGCuGAcCCGGGGgaccCCGa--- -3'
miRNA:   3'- -GGCCGCCGuCUuGGCCCCa---GGCaggu -5'
5544 3' -62 NC_001806.1 + 56656 0.66 0.667932
Target:  5'- gCCGGCGGCccgugggaucguuggGGggUCGGGGgggaCGggggCCc -3'
miRNA:   3'- -GGCCGCCG---------------UCuuGGCCCCag--GCa---GGu -5'
5544 3' -62 NC_001806.1 + 57756 0.66 0.692918
Target:  5'- gCGGCGGgAcGGGCCGccGUCCcGUCCGc -3'
miRNA:   3'- gGCCGCCgU-CUUGGCccCAGG-CAGGU- -5'
5544 3' -62 NC_001806.1 + 59132 0.66 0.702454
Target:  5'- uUCGGUGGUGagggcagccGGGCCGGGGUCUcggGUgCGg -3'
miRNA:   3'- -GGCCGCCGU---------CUUGGCCCCAGG---CAgGU- -5'
5544 3' -62 NC_001806.1 + 62308 0.68 0.586626
Target:  5'- gUGGCGGCGG-GCCuggcgcggagGGGGUuuGUCg- -3'
miRNA:   3'- gGCCGCCGUCuUGG----------CCCCAggCAGgu -5'
5544 3' -62 NC_001806.1 + 64568 0.7 0.43123
Target:  5'- gCGuuCGGCGGGACCGGaGGaaCGUCCAg -3'
miRNA:   3'- gGCc-GCCGUCUUGGCC-CCagGCAGGU- -5'
5544 3' -62 NC_001806.1 + 64953 0.69 0.511006
Target:  5'- aCCGGCgucGGCGcccGGGCCGGGGgucCCGgggcaaacaUCCAg -3'
miRNA:   3'- -GGCCG---CCGU---CUUGGCCCCa--GGC---------AGGU- -5'
5544 3' -62 NC_001806.1 + 65649 0.68 0.56648
Target:  5'- cCCGGCGGCcucccccuGGGuggcugcGCUGGGG-CCG-CCGg -3'
miRNA:   3'- -GGCCGCCG--------UCU-------UGGCCCCaGGCaGGU- -5'
5544 3' -62 NC_001806.1 + 68100 0.66 0.673719
Target:  5'- gCCGGgcgucaUGGCAG-ACCGcGGUcucCCGUCCGa -3'
miRNA:   3'- -GGCC------GCCGUCuUGGCcCCA---GGCAGGU- -5'
5544 3' -62 NC_001806.1 + 68587 0.72 0.344407
Target:  5'- gCGGCGGCccuGGGGCCGGuccgcGUCCG-CCAg -3'
miRNA:   3'- gGCCGCCG---UCUUGGCCc----CAGGCaGGU- -5'
5544 3' -62 NC_001806.1 + 71650 0.74 0.264862
Target:  5'- -gGGUGGCGGAAacaacacuaaccCCgGGGGUCCgGUCCAu -3'
miRNA:   3'- ggCCGCCGUCUU------------GG-CCCCAGG-CAGGU- -5'
5544 3' -62 NC_001806.1 + 77962 0.68 0.53897
Target:  5'- gCGGCGGCc---CCGGGG-CCG-CCGc -3'
miRNA:   3'- gGCCGCCGucuuGGCCCCaGGCaGGU- -5'
5544 3' -62 NC_001806.1 + 78672 0.66 0.683338
Target:  5'- gCUGGCGGCAGugcuCCuGGGcgcgcCCGUCg- -3'
miRNA:   3'- -GGCCGCCGUCuu--GGcCCCa----GGCAGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.