miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5544 3' -62 NC_001806.1 + 20616 0.73 0.296057
Target:  5'- gCGGaugGGCGGGGCCgGGGGUUCGaCCAa -3'
miRNA:   3'- gGCCg--CCGUCUUGG-CCCCAGGCaGGU- -5'
5544 3' -62 NC_001806.1 + 20991 0.72 0.344407
Target:  5'- aCGGCGGgGGucgUCGGGGUCCGUg-- -3'
miRNA:   3'- gGCCGCCgUCuu-GGCCCCAGGCAggu -5'
5544 3' -62 NC_001806.1 + 21323 0.7 0.465831
Target:  5'- gCCGGCGa-GGAcGCCGGGGacgCCGUCUc -3'
miRNA:   3'- -GGCCGCcgUCU-UGGCCCCa--GGCAGGu -5'
5544 3' -62 NC_001806.1 + 21740 0.66 0.657301
Target:  5'- gCGGCcgaccacgcacgcgaGGCGcGGGCCgucgggcGGGGUCCGUCgAg -3'
miRNA:   3'- gGCCG---------------CCGU-CUUGG-------CCCCAGGCAGgU- -5'
5544 3' -62 NC_001806.1 + 22869 0.72 0.358474
Target:  5'- cCUGGCGGCcgucccgGGGcugGCCGGGGcCCGgcccgCCAg -3'
miRNA:   3'- -GGCCGCCG-------UCU---UGGCCCCaGGCa----GGU- -5'
5544 3' -62 NC_001806.1 + 23055 0.68 0.567436
Target:  5'- gCCGGCGGCAGcgaggccGCCGuGG-CCG-CCGu -3'
miRNA:   3'- -GGCCGCCGUCu------UGGCcCCaGGCaGGU- -5'
5544 3' -62 NC_001806.1 + 23552 0.72 0.330033
Target:  5'- gCGGCGGCAGcccCCGGGGcCCaG-CCAc -3'
miRNA:   3'- gGCCGCCGUCuu-GGCCCCaGG-CaGGU- -5'
5544 3' -62 NC_001806.1 + 23937 0.84 0.061293
Target:  5'- gCCGGCGGCGGGGCCuGGGGgggCCG-CCGg -3'
miRNA:   3'- -GGCCGCCGUCUUGG-CCCCa--GGCaGGU- -5'
5544 3' -62 NC_001806.1 + 24537 0.66 0.692918
Target:  5'- gCCgGGCGGCGGccUCGGGGaccaCCGacgCCAu -3'
miRNA:   3'- -GG-CCGCCGUCuuGGCCCCa---GGCa--GGU- -5'
5544 3' -62 NC_001806.1 + 27278 0.66 0.673719
Target:  5'- aUCGGCGGCcgccAGcGCggCGGGGcCCGgCCAa -3'
miRNA:   3'- -GGCCGCCG----UCuUG--GCCCCaGGCaGGU- -5'
5544 3' -62 NC_001806.1 + 30289 0.67 0.644709
Target:  5'- cCCGG-GGCGGAGCCGG---CCGcCCGc -3'
miRNA:   3'- -GGCCgCCGUCUUGGCCccaGGCaGGU- -5'
5544 3' -62 NC_001806.1 + 33104 0.69 0.501817
Target:  5'- gCCGGCGaGCGGGuccggaCGGGGcCCGgaccgCCGc -3'
miRNA:   3'- -GGCCGC-CGUCUug----GCCCCaGGCa----GGU- -5'
5544 3' -62 NC_001806.1 + 33615 0.7 0.457044
Target:  5'- aCCGGC-GCGGGGCgGGGGgCCGgauacCCAc -3'
miRNA:   3'- -GGCCGcCGUCUUGgCCCCaGGCa----GGU- -5'
5544 3' -62 NC_001806.1 + 33811 0.7 0.457044
Target:  5'- gCCGGCGGguGGACucgCGGGGggCCGg--- -3'
miRNA:   3'- -GGCCGCCguCUUG---GCCCCa-GGCaggu -5'
5544 3' -62 NC_001806.1 + 34005 0.66 0.66407
Target:  5'- gCGGgGGCGuGGGCgGGGGUgcUCGUCg- -3'
miRNA:   3'- gGCCgCCGU-CUUGgCCCCA--GGCAGgu -5'
5544 3' -62 NC_001806.1 + 34404 0.69 0.520263
Target:  5'- gCGGUGGCcGGGCCGGGccgggCCGggCCGg -3'
miRNA:   3'- gGCCGCCGuCUUGGCCCca---GGCa-GGU- -5'
5544 3' -62 NC_001806.1 + 37763 0.68 0.53897
Target:  5'- gUCGGCGGCGGGcgccuuucgcuCCGGGG-CCGgggcgcgggggUCCGc -3'
miRNA:   3'- -GGCCGCCGUCUu----------GGCCCCaGGC-----------AGGU- -5'
5544 3' -62 NC_001806.1 + 37922 0.72 0.351761
Target:  5'- aUGGgGGC---GCCGGGGccgUCCGUCCAc -3'
miRNA:   3'- gGCCgCCGucuUGGCCCC---AGGCAGGU- -5'
5544 3' -62 NC_001806.1 + 37987 0.66 0.66407
Target:  5'- uCUGGgGGCAcgccGGCgGGGGUCCGacaaaCCAu -3'
miRNA:   3'- -GGCCgCCGUc---UUGgCCCCAGGCa----GGU- -5'
5544 3' -62 NC_001806.1 + 38290 0.67 0.625312
Target:  5'- gCGaGCGGCGucGAguAUCGGcuccGGUCCGUCCu -3'
miRNA:   3'- gGC-CGCCGU--CU--UGGCC----CCAGGCAGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.