miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5544 3' -62 NC_001806.1 + 4730 0.71 0.40629
Target:  5'- cCCGuucGCGGCcccGGGCCGGGGcCCGgucgCCGg -3'
miRNA:   3'- -GGC---CGCCGu--CUUGGCCCCaGGCa---GGU- -5'
5544 3' -62 NC_001806.1 + 17789 0.71 0.40629
Target:  5'- -gGGUGGgAGAACCGuGGG-CCGUgCCGa -3'
miRNA:   3'- ggCCGCCgUCUUGGC-CCCaGGCA-GGU- -5'
5544 3' -62 NC_001806.1 + 64568 0.7 0.43123
Target:  5'- gCGuuCGGCGGGACCGGaGGaaCGUCCAg -3'
miRNA:   3'- gGCc-GCCGUCUUGGCC-CCagGCAGGU- -5'
5544 3' -62 NC_001806.1 + 100388 0.7 0.43974
Target:  5'- gCCgGGCGGCgcgGGGGCCGGGGUgCCcgauGUCgGa -3'
miRNA:   3'- -GG-CCGCCG---UCUUGGCCCCA-GG----CAGgU- -5'
5544 3' -62 NC_001806.1 + 38395 0.7 0.448346
Target:  5'- gCGGCGGCucuccGCCggcucgggGGGGUCCucGUCCAg -3'
miRNA:   3'- gGCCGCCGucu--UGG--------CCCCAGG--CAGGU- -5'
5544 3' -62 NC_001806.1 + 151300 0.7 0.448346
Target:  5'- gCGGCGGCGGuggGCCGGGccUCUGgcgCCGg -3'
miRNA:   3'- gGCCGCCGUCu--UGGCCCc-AGGCa--GGU- -5'
5544 3' -62 NC_001806.1 + 150486 0.7 0.45617
Target:  5'- gCCGGaaGCGGGaagggcgGCCGGGG-CCGcCCAu -3'
miRNA:   3'- -GGCCgcCGUCU-------UGGCCCCaGGCaGGU- -5'
5544 3' -62 NC_001806.1 + 33615 0.7 0.457044
Target:  5'- aCCGGC-GCGGGGCgGGGGgCCGgauacCCAc -3'
miRNA:   3'- -GGCCGcCGUCUUGgCCCCaGGCa----GGU- -5'
5544 3' -62 NC_001806.1 + 33811 0.7 0.457044
Target:  5'- gCCGGCGGguGGACucgCGGGGggCCGg--- -3'
miRNA:   3'- -GGCCGCCguCUUG---GCCCCa-GGCaggu -5'
5544 3' -62 NC_001806.1 + 21323 0.7 0.465831
Target:  5'- gCCGGCGa-GGAcGCCGGGGacgCCGUCUc -3'
miRNA:   3'- -GGCCGCcgUCU-UGGCCCCa--GGCAGGu -5'
5544 3' -62 NC_001806.1 + 2459 0.7 0.465831
Target:  5'- cCCGGCGGCcccgugGGggUgGGGGUuaUCGUCg- -3'
miRNA:   3'- -GGCCGCCG------UCuuGgCCCCA--GGCAGgu -5'
5544 3' -62 NC_001806.1 + 89088 0.69 0.483663
Target:  5'- cCCGGCGcGCuucuCCGGGGgggcauccUCGUCCAg -3'
miRNA:   3'- -GGCCGC-CGucuuGGCCCCa-------GGCAGGU- -5'
5544 3' -62 NC_001806.1 + 140543 0.69 0.483663
Target:  5'- aCGGCggGGCAGAGCCGc---CCGUCCGa -3'
miRNA:   3'- gGCCG--CCGUCUUGGCcccaGGCAGGU- -5'
5544 3' -62 NC_001806.1 + 33104 0.69 0.501817
Target:  5'- gCCGGCGaGCGGGuccggaCGGGGcCCGgaccgCCGc -3'
miRNA:   3'- -GGCCGC-CGUCUug----GCCCCaGGCa----GGU- -5'
5544 3' -62 NC_001806.1 + 64953 0.69 0.511006
Target:  5'- aCCGGCgucGGCGcccGGGCCGGGGgucCCGgggcaaacaUCCAg -3'
miRNA:   3'- -GGCCG---CCGU---CUUGGCCCCa--GGC---------AGGU- -5'
5544 3' -62 NC_001806.1 + 2866 0.69 0.520263
Target:  5'- -gGGgGGCGcgggcguccGAGCCGGGGg-CGUCCGc -3'
miRNA:   3'- ggCCgCCGU---------CUUGGCCCCagGCAGGU- -5'
5544 3' -62 NC_001806.1 + 34404 0.69 0.520263
Target:  5'- gCGGUGGCcGGGCCGGGccgggCCGggCCGg -3'
miRNA:   3'- gGCCGCCGuCUUGGCCCca---GGCa-GGU- -5'
5544 3' -62 NC_001806.1 + 39410 0.68 0.53897
Target:  5'- -gGGCGGUGGuacaagaagguGACC-GGGUCCGUCuCAa -3'
miRNA:   3'- ggCCGCCGUC-----------UUGGcCCCAGGCAG-GU- -5'
5544 3' -62 NC_001806.1 + 37763 0.68 0.53897
Target:  5'- gUCGGCGGCGGGcgccuuucgcuCCGGGG-CCGgggcgcgggggUCCGc -3'
miRNA:   3'- -GGCCGCCGUCUu----------GGCCCCaGGC-----------AGGU- -5'
5544 3' -62 NC_001806.1 + 77962 0.68 0.53897
Target:  5'- gCGGCGGCc---CCGGGG-CCG-CCGc -3'
miRNA:   3'- gGCCGCCGucuuGGCCCCaGGCaGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.